Publications

Microbial utilization of sugars in soil assessed by position-specific labeling and compound-specific 13C-PLFA-analysis

No abstract is provided for this article.

Biochar Stability in Soils: Mechanisms of C Sequestration and Fertility Improvements

No abstract is provided for this article.

Fungal necromass fate in paddy soil depends on fertilization

Influence of soil moisture on C incorporation and preservation in soil

No abstract is provided for this article.

Contrasting effects of arsenic on mycorrhizal-mediated silicon and phosphorus uptake by rice

Silicon (Si) and arbuscular mycorrhizal fungi (AMF) increase plant resistance to various environmental stresses, including heavy metal (and metalloid) toxicity. Although Si and AMF each independently enhance plant tolerance, the nature of their interactions and their combined impacts on nutrient uptake, especially in the context of toxic elements such as arsenic (As), remains to be elucidated. This study investigated AMF-mediated regulation of plant nutrient uptake under As stress using rice, a model Si-accumulating plant. Experiments were conducted under As-free and As stress conditions, incorporating AMF inoculation and silicic acid application, with a focus on nutrient uptake and transporter expression. Without As, AMF inoculation increased shoot Si content by 44%, while invariance was common under As toxicity stress (10 μM of As(III)). Despite As presence, AMF increased Lsi1 expression with Si application, elevating As content in roots and shoots by 38% and 55%, respectively. Introduction of As stress amplified AMF role in phosphorus (P) uptake from 13% to 38%, correlating with up-regulated P transporter expression. Three-way ANOVA of interactions among As, Si, and AMF on P and As uptake by rice revealed that As amplified AMF potential to increase P uptake while weakening promotive effect on Si uptake. Silicon reduced As absorption, while AMF increased As uptake, but the elevated As were potentially retained within fungal hyphae, limiting transfer to rice plants. Overall, As toxicity stress had contrasting effects on P- and Si-promoting roles of AMF. These findings contribute to our understanding of plant-fungal interactions under heavy metal stress.

Calibration of 2‐D soil zymography for correct analysis of enzyme distribution

Soil zymography is a new technique developed to visualize two‐dimensional distributions of enzyme activities. The method consists of incubating a membrane saturated with an enzyme‐specific fluorogenic substrate on a surface of the soil sample, followed by recording the membrane image generated by a fluorescent product (e.g. MUF: methylumbelliferone) in ultraviolet light. Despite its relative ease of use, performing zymography involves multiple user‐made decisions that might affect the accuracy of enzyme activity estimates. Therefore, unification of the zymography methodology is required for correct estimations and comparisons of various studies. We evaluated the following methodological aspects of the implementation of zymography: (a) camera settings and image processing, (b) effects of evaporation and (c) calibration procedures. Camera settings (shutter speeds or exposure time) affected the intensity of background fluorescence and signal‐to‐noise ratios (SNR). However, because their combined effects varied depending on MUF concentrations, light and camera setting need to be optimized for the expected range of MUF concentrations prior to zymography. Evaporation of MUF solution from the membrane had no effect on fluorescence. Relations between MUF concentration and intensity of fluorescence during calibrations demonstrated a saturated pattern and were strongly affected by image noise outside the optimal range (e.g. 8–14 μ m MUF pixel −1 ). We developed a new calibration approach that is based on a piecewise linear regression. The new approach accounted for specific ranges of MUF concentration and uses nonuniformly saturated membranes, reflecting the real distribution of enzyme activities in soil. The new calibration algorithm eliminated biases of the standard calibration and resulted in greater accuracy in predicting MUF concentrations. Highlights We developed a new approach to calibration for 2‐D soil zymography. The approach accounted for spatial nonuniformity of soil zymograms. Standard calibration resulted in systematic underestimation of enzyme activity. Soil zymography requires pixel‐based calibration with nonuniformly saturated membranes.

Long-term nutrient imbalance raises soil antibiotic accumulation and bacterial antibiotic resistance in a Chinese wheat–maize cropping system

Corrigendum to “Accelerated microbial activity, turnover and efficiency in the drilosphere is depth dependent” [Soil Biology & Biochemistry 147 (2020) 107852]

Mineral-bound lipid formation in soils and sediments: the importance of microbial pathways

Preface: Arable Land Quality: Observation, Estimation, Optimization, and Application

Food security is a worldwide challenge that is related to the basic human needs of sustainable development [...]

Allocation of freshly assimilated carbon into primary and secondary metabolites after in situ¹³C pulse labelling of Norway spruce (<i>Picea abies</i>)

Plants allocate carbon (C) to sink tissues depending on phenological, physiological or environmental factors. We still have little knowledge on C partitioning into various cellular compounds and metabolic pathways at various ecophysiological stages. We used compound-specific stable isotope analysis to investigate C partitioning of freshly assimilated C into tree compartments (needles, branches and stem) as well as into needle water-soluble organic C (WSOC), non-hydrolysable structural organic C (stOC) and individual chemical compound classes (amino acids, hemicellulose sugars, fatty acids and alkanes) of Norway spruce (Picea abies) following in situ 13C pulse labelling 15 days after bud break. The 13C allocation within the above-ground tree biomass demonstrated needles as a major C sink, accounting for 86% of the freshly assimilated C 6 h after labelling. In needles, the highest allocation occurred not only into the WSOC pool (44.1% of recovered needle 13C) but also into stOC (33.9%). Needle growth, however, also caused high 13C allocation into pathways not involved in the formation of structural compounds: (i) pathways in secondary metabolism, (ii) C-1 metabolism and (iii) amino acid synthesis from photorespiration. These pathways could be identified by a high 13C enrichment of their key amino acids. In addition, 13C was strongly allocated into the n-alkyl lipid fraction (0.3% of recovered 13C), whereby 13C allocation into cellular and cuticular exceeded that of epicuticular fatty acids. 13C allocation decreased along the lipid transformation and translocation pathways: the allocation was highest for precursor fatty acids, lower for elongated fatty acids and lowest for the decarbonylated n-alkanes. The combination of 13C pulse labelling with compound-specific 13C analysis of key metabolites enabled tracing relevant C allocation pathways under field conditions. Besides the primary metabolism synthesizing structural cell compounds, a complex network of pathways consumed the assimilated 13C and kept most of the assimilated C in the growing needles.

Soil organic matter priming and carbon balance after straw addition is regulated by long-term fertilization

Nitrogen Availability Governs Priming Effect Induced by Biodegradable Microplastics Through Microbial Life‐Strategies

ABSTRACT Microplastics (MPs) have emerged as an increasingly concerning soil contaminant. Although biodegradable plastics are good alternatives to non‐biodegradable plastics in croplands, they can influence soil organic matter (SOM) decomposition through a priming effect. We investigated how the biodegradable MPs‐induced priming effect responds to nitrogen (N) availability in soil. The impact of biodegradable MPs and mineral N on the priming effect was generalized by a meta‐analysis, and the mechanisms were investigated by 13 C isotope techniques coupled with 16S rRNA amplicon sequencing. By combining the meta‐analysis of data from 67 publications with an incubation experiment, we tested the MPs‐induced priming effect and their mechanisms depending on four levels of mineral N: 1.50, 0.75, 0.50, 0.30 mg N g −1 soil. The meta‐analysis suggested that the mineral N input decreased the priming effect induced by root exudates (effects size: −1.1) and MPs (effects size: −1.5), but increased the priming effect induced by biochar (effects size: 3.1). The effect size of mineral N input on the priming effect decreased with the increase of carbon‐to‐nitrogen ratio (C/N) between added organic carbon and mineral N. Due to the differences in MPs degradability, the range of the priming effects induced by polyhydroxyalkanoate was from 200% to 250%, while the priming effects induced by polylactic acid were negative (−22% to −5%). Mineral N primarily mitigated the MPs‐induced priming effect by reducing the abundances of microorganisms with K‐strategy (Acidobacteria and Basidiomycota), thereby reducing their N mining from SOM. Priming reduction by N fertilization was minimal when the C/N between added MPs carbon and mineral N was 10 (high N availability), and the abundance of r ‐strategists (Proteobacteria and Ascomycota) was large. We conclude that both r ‐ and K‐strategists collectively drive the intensity and direction of the MPs‐induced priming effect, which decreases with increasing C/N between added MPs carbon and mineral N.

Effect of plant cultivation on the decomposition of soil organic matter.

No abstract is provided for this article.

Effect of Immobilizing Substances and Salinity on Heavy Metals Availability to Wheat Grown on Sewage Sludge-Contaminated Soil

The objective of the investigation was to evaluate the effect of immobilizing substances and NaCl salinity on the availability of heavy metals: Zn, Cd, Cu, Ni, and Pb to wheat (Triticum aestivum L.). In greenhouse pot experiment, a sewage sludge amended soil was treated with the following immobilizing substances: three clay minerals (Na-bentonite, Ca-bentonite and zeolite), iron oxides (goethite and hematite), and phosphate fertilizers (superphosphate and Novaphos). The pots were planted with wheat and were irrigated either with deionized or saline water containing 1600 mg L−1 NaCl. Wheat was harvested two times for shoot metal concentrations and biomass measurements. Metal species in soil solution were estimated using the software MINEQL+. The addition of metal immobilizing substances to the soil significantly decreased metal availability to wheat. The largest reduction in metal bioavailability was found for bentonites. The irrigation with saline water (1600 mg L−1 NaCl) resulted in a significant increase in metal chloride species (MCl+ and MCl2 0). The highest metal complexation with Cl occurred for Cd, which was about 53% of its total soil solution concentration. The total concentration of Cd (CdT) in soil solution increased by 1.6–2.8-fold due to saline water. The NaCl salinity caused a significant increase in uptake and shoot concentration of Cd for two harvests and small but significant increase in shoot Pb concentration for the second harvest. It was concluded that the use of bentonites is the most promising for the reduction of heavy metal availability to plants. Saline water containing 1600 mg L− 1 NaCl increased the availability of Cd and Pb to wheat and decreased the efficiency of bentonites to immobilize soluble Cd. Keywords: Heavy metal speciesclay minerals (Na-bentonite, Ca-bentonite, and zeolite)iron oxidesphosphate fertilizersNaCl salinityheavy metals uptake. We thank Dr. A. Lehmann for the information provided about the contaminated soil, and Dr. M. Zarei and D. Frobel for analysis of clay mineralogy. We are very thankful to Fa. IKO Minerals GmbH for using their bentonites and zeolite and Bayer for using its Fe-Oxides. We are very thankful to the reviewers for the useful comments. This work was partly funded by the Egyptian government.

Anaerobic oxidation of methane in paddy soil: Role of electron acceptors and fertilization in mitigating CH4 fluxes

The anaerobic oxidation of methane (AOM) in marine ecosystems is ubiquitous and largely coupled to sulfate reduction. In contrast, the role of AOM in terrestrial environments and the dominant electron acceptors driving terrestrial AOM needs deeper understanding. Submerged rice paddies with intensive CH4 production have a high potential for AOM, which can be important for greenhouse gas mitigation strategies. Here, we used 13CH4 to quantify the AOM rates in paddy soils under organic (Pig manure, Biochar) and mineral (NPK) fertilization. Alternative-to-oxygen electron acceptors for CH4 oxidation, including Fe3+, NO3 −, SO4 2−, and humic acids, were examined and their potential for CH4 mitigation from rice paddies was assessed by 13CH4 oxidation to 13CO2 under anoxic conditions. During 84 days of anaerobic incubation, the cumulative AOM (13CH4-derived CO2) reached 0.15–1.3 μg C g-1 dry soil depending on fertilization. NO3- was the most effective electron acceptor, yielding an AOM rate of 0.80 ng C g-1 dry soil h-1 under Pig manure. The role of Fe3+ in AOM remained unclear, whereas SO42- inhibited AOM but strongly stimulated the production of unlabeled CO2, indicating intensive sulfate-induced decomposition of organic matter. Humic acids were the second most effective electron acceptor for AOM, but increased methanogenesis by 5–6 times in all fertilization treatments. We demonstrated for the first time that organic electron acceptors (humic acids) are among the key AOM drivers and are crucial in paddy soils. The most pronounced AOM in paddy soils occurred under Pig manure, followed by Control and NPK, while AOM was the lowest under Biochar. We estimate that nitrate (nitrite)-dependent AOM in paddy fields globally consumes ~3.9 Tg C–CH4 yr-1, thereby offsetting the global CH4 emissions by ~10–20%. Thus, from a broader agroecological perspective, the organic and mineral fertilizers control an important CH4 sink under anaerobic conditions in submerged ecosystems. Appropriate adjustments of soil fertilization management strategies would therefore help to decrease the net CH4 flux to the atmosphere and hence the global warming.

Habitat heterogeneity drives arbuscular mycorrhizal fungi and shrub communities in karst ecosystems

Priming effect stimulates carbon release from thawed permafrost

Climate warming leads to widespread permafrost thaw with a fraction of the thawed permafrost carbon (C) being released as carbon dioxide (CO2 ), thus triggering a positive permafrost C-climate feedback. However, large uncertainty exists in the size of this model-projected feedback, partly owing to the limited understanding of permafrost CO2 release through the priming effect (i.e., the stimulation of soil organic matter decomposition by external C inputs) upon thaw. By combining permafrost sampling from 24 sites on the Tibetan Plateau and laboratory incubation, we detected an overall positive priming effect (an increase in soil C decomposition by up to 31%) upon permafrost thaw, which increased with permafrost C density (C storage per area). We then assessed the magnitude of thawed permafrost C under future climate scenarios by coupling increases in active layer thickness over half a century with spatial and vertical distributions of soil C density. The thawed C stocks in the top 3 m of soils from the present (2000-2015) to the future period (2061-2080) were estimated at 1.0 (95% confidence interval (CI): 0.8-1.2) and 1.3 (95% CI: 1.0-1.7) Pg (1 Pg = 1015 g) C under moderate and high Representative Concentration Pathway (RCP) scenarios 4.5 and 8.5, respectively. We further predicted permafrost priming effect potential (priming intensity under optimal conditions) based on the thawed C and the empirical relationship between the priming effect and permafrost C density. By the period 2061-2080, the regional priming potentials could be 8.8 (95% CI: 7.4-10.2) and 10.0 (95% CI: 8.3-11.6) Tg (1 Tg = 1012 g) C year-1 under the RCP 4.5 and RCP 8.5 scenarios, respectively. This large CO2 emission potential induced by the priming effect highlights the complex permafrost C dynamics upon thaw, potentially reinforcing permafrost C-climate feedback.

N fluxes in an agricultural catchment under monsoon climate: A budget approach at different scales

The purpose of this study was to develop options for a more sustainable catchment management, resulting in a reduction of agricultural non-point pollution of water resources in South Korean agricultural catchments. Therefore, an N budget analysis was conducted, which related N inputs into soil under intensive agriculture to N outputs at both field and catchment scale in a mountainous catchment in South Korea. The N budget of all investigated crops was positive, with total N inputs exceeding N outputs by 2.8 times. Radish showed the highest N uptake efficiency (43–45%), whereas rice showed the lowest with 24–30%. At the catchment scale, agriculture contributed over 90% to the maximum N surplus (473Mg). Rice and radish, with over 100MgN surplus each, contributed the largest part. Comparing these results to the N export in the catchment outlet, it was found that N leaching and surface runoff were the dominant loss pathways, leading to a seasonal inorganic N export of 329Mg. Because fertilizer N was the major N input (>50%) for all crop types except soybean, its reduction was identified as the major scope of action for N savings at the field and catchment scale. The currently observed trend of land use change from annual to perennial crops additionally assists the reduction of N surplus but shows only a spatially limited applicability for the future. Further measures like split applications, application timing to match crop needs and cover crops during the fallow complement the attempt.