Publications

Plant roots interact with rhizosphere microorganisms to accelerate soil organic matter (SOM) mineralization for nutrient acquisition. Root-mediated changes in SOM mineralization largely depend on root-derived carbon (root-C) input and soil nutrient status. Hence, intraspecific competition over plant development and spatiotemporal variability in the root-C input and nutrients uptake may modify SOM mineralization. To investigate the effect of intraspecific competition on SOM mineralization at three growth stages (heading, flowering, and ripening), we grew maize (C4 plant) under three planting densities on a C3 soil and determined in situ soil C- and N-mineralization by 13 C-natural abundance and 15 N-pool dilution approaches. From heading to ripening, soil C- and N-mineralization rates exhibit similar unimodal trends and were tightly coupled. The C-to-N-mineralization ratio (0.6 to 2.6) increased with N availability, indicating that an increase in N-mineralization with N depletion was driven by microorganisms mining N-rich SOM. With the intraspecific competition, plants increased specific root lengths as an efficient strategy to compete for resources. Root morphologic traits rather than root biomass per se were positively related to C- and N-mineralization. Overall, plant phenology and intraspecific competition controlled the intensity and mechanisms of soil C- and N- mineralization by the adaptation of root traits and nutrient mining.

Soil organic matter (SOM) and its fractions play key roles in optimizing crop yield and improving soil quality. However, how functional SOM fractions responded to long-term fertilization and their relative importance for C sequestration were less addressed. In this study, we determined the effects of long-term fertilization on six functional SOM fractions (unprotected, physically protected, physico-biochemically protected, physico-chemically protected, chemically protected, and biochemically protected) based on two long-term fertilization experiments carried out in South China. The unprotected coarse particulate organic matter (cPOM), the biochemically and chemically protected silt-sized fractions (NH-dSilt and H-dSilt) were the primary C storage fractions under long-term fertilization, accounting for 23.6–46.2%, 15.7–19.4%, and 14.4–17.4% of the total soil organic carbon (SOC) content in upland soil and 19.5–29.3%, 9.9–15.5%, and 14.2–17.2% of the total SOC content in paddy soil, respectively. Compared with the control treatment (CK) in upland soil, the application of manure combined with mineral NPK (NPKM) resulted in an increase in the SOC content in the cPOM, pure physically protected fraction (iPOM), the physico-chemically protected (H-μSilt), and the chemically protected (H-dSilt) fraction by 233%, 166%, 124%, and 58%, respectively. Besides, the SOC increase in upland soil expressed as SOC content per unit of total SOC for iPOM, H-μSilt, cPOM and H-dSilt were the highest and as large as 283%, 248%, 194%, and 105% respectively. In paddy soil, the highest increase per unit of total SOC was H-dSilt (190%), followed by H-dClay (156%) and H-μSilt (155%). These results suggested that the upland soil could stabilize more C through the pure physical, whereas the chemical protection mechanism played a more important role in paddy soil. Chemical protection mechanism within the microaggregates played important roles in sequestrating C in both upland and paddy soils. Overall, the different responses of functional SOM fractions to long-term fertilization indicate different mechanisms for SOM cycling in terms of C sequestration under upland and paddy systems.

Abstract Rhizoliths, cylindrical concretions formed primarily by CaCO 3 accumulation around plant roots, serve as valuable indicators of past environmental conditions, including hydrology, redox dynamics, and carbon cycling. Despite growing interest in paleo-reconstructions, the lack of quantitative studies on formation mechanisms complicates interpretation. We present “RhizoCalc”, the first mechanistic model (deployed in HYDRUS-1D) computing rhizolith formation in CaCO 3 -containing loess soils, integrating water fluxes, root water uptake, and (Ca)-carbonate chemistry to simulate conditions under which rhizoliths develop. Hydraulic fluxes drive Ca 2+ transport (0.13–1 mmol/L) toward the rhizosphere, governed by root water uptake under low (ET o = 0.03 cm/d) and high (ET o = 1 cm/d) flow rates at optimal (h o = –100 cm) and intermediate (h o = –1000 cm) moisture conditions. The simulations show that hydraulic constraints and calcite-induced jamming of the porous medium are key inhibitors of rhizolith growth, distinguishing physical limitations from biogeochemical feedbacks in the rhizosphere. On top of this, our work reveals root encasement and reliquary varieties, linking their physical and biogeochemical mechanisms to rhizolith transformations and offering insights into paleosol hydrology and redox dynamics. Under intermediate soil-water conditions with 1 mmol/L Ca 2+ , concentric rhizoliths with 0.2–3 cm radii form chrono-sequentially over 1.5–150 years. Each layer preserves CaCO 3 constituents (δ 18 O, δ 13 C, 44 Ca, 46 Ca, 48 Ca), root-derived biomarkers (e.g., lignin), and clumped isotopes (Δ 47 ), preserving environmental signatures across time into the future. Therefore, this framework conceptualizes each rhizolith as a ‘time-capsule’ with each successive CaCO 3 layer encapsulating a snapshot of vital environmental proxies, providing a window into otherwise inaccessible historic ecosystem dynamics. Refining reconstructions of Earth’s paleoclimatic history requires cross-sectional isolation of concentric layers in well-preserved rhizoliths, capturing distinct isotopic bands and their stratigraphy.

Abstract Increased belowground carbon (C) transfer by plant roots at elevated CO 2 may change properties of the microbial community in the rhizosphere. Previous investigations that focused on total soil organic C or total microbial C showed contrasting results: small increase, small decrease or no changes. We evaluated the effect of 5 years of elevated CO 2 (550 ppm) on four extracellular enzymes: β ‐glucosidase, chitinase, phosphatase, and sulfatase. We expected microorganisms to be differently localized in aggregates of various sizes and, therefore analyzed microbial biomass (C mic by SIR) and enzyme activities in three aggregate‐size classes: large macro‐ (> 2 mm), small macro‐ (0.25–2 mm), and microaggregates (< 0.25 mm). To estimate the potential enzyme production, we activated microorganisms by substrate (glucose and nutrients) amendment. Although C total and C mic as well as the activities of β ‐glucosidase, phosphatase, and sulfatase were unaffected in bulk soil and in aggregate‐size classes by elevated CO 2 , significant changes were observed in potential enzyme production after substrate amendment. After adding glucose, enzyme activities under elevated CO 2 were 1.2–1.9‐fold higher than under ambient CO 2 . This indicates the increased activity of microorganisms, which leads to accelerated C turnover in soil under elevated CO 2 . Significantly higher chitinase activity in bulk soil and in large macroaggregates under elevated CO 2 revealed an increased contribution of fungi to turnover processes. At the same time, less chitinase activity in microaggregates underlined microaggregate stability and the difficulties for fungal hyphae penetrating them. We conclude that quantitative and qualitative changes of C input by plants into the soil at elevated CO 2 affect microbial community functioning, but not its total content. Future studies should therefore focus more on the changes of functions and activities, but less on the pools.

Agricultural soil multifunctionality is greatly impacted by belowground processesdriven by a complex group of microorganisms that change during plant growt

Nitrification acidifies soil, and the produced H+ are neutralized by inorganic carbon (C) in soil leading to irreversible CO2 emissions. CO2 released by nitrogen (N) fertilizer-induced acidification is partitioned between solid (CaCO3 re-precipitation), liquid (dissolved HCO3 − and CO3 2−) and gaseous (CO2) phases. Therefore, quantifying the effects of N fertilization on CO2 emissions from soil inorganic C is an enormous challenge. 14C-labeled CaCO3 was used as a model inorganic C to trace the released CO2 caused by acidification by five fertilizers: chicken manure, urea, KNO3, NH4NO3, and (NH4)2SO4 added at three N rates. Cropland soil was homogenously mixed with Ca14CO3 powder and fertilizers, and the emitted CO2 was trapped in NaOH solution to determine total CO2 and 14CO2 efflux originated from inorganic C. Fertilization, particularly ammonium-based fertilizers ((NH4)2SO4, NH4NO3), strongly decreased soil pH by 0.35 units over 40 days. All fertilizers except KNO3 increased total CO2 emissions by 21%–490% compared to the unfertilized control soil. The fertilization effects on cumulative 14CO2 emission induced by CaCO3 neutralization, corresponded to acidification and decreased in the order (NH4)2SO4 > NH4NO3 > urea > KNO3 > chicken manure. Ammonium-based fertilizers induced the strongest CO2 emissions originated from inorganic C, emitting 1.6–4.5 times more 14CO2 than non-fertilized soils during the first nine days. The total CO2 emissions from SIC were proportional to the fertilizer dose applied. Therefore, we conclude that both the choice of N fertilizers and their application rates need to be considered to control CO2 emissions originated from inorganic C. The soil inorganic C losses should be prevented not only because of their irreversible contribution to atmospheric CO2, but also to safeguard ecosystem services of CaCO3, such as organic matter preservation, soil structure stabilization, and C sequestration.

Knowledge of belowground C input by rice plants and its fate is essential for managing C cycling and sequestration in paddy soils. Previous reviews have summarized C input and the pathways of root-derived C in upland soils by labeling with 14C or 13C (13/14C), while rice rhizodeposition and C input in paddy soils have not been comprehensively evaluated. Here, we analyzed the results of 13/14C pulse and continuous labeling studies using 112 datasets from 13 articles on the allocation and pathways of photosynthesized C by rice plants to assess C input, budget, and amount stabilized in paddy soils. Overall, 13/14C partitioning estimated by continuous labeling was 72% to the shoots, 17% to the roots, 10% to the soil, and 1.3% was recovered in microbial biomass. Pulse-labeling studies showed a similar C partitioning: 79%, 13%, 5.5%, and 2.1%, respectively. The total belowground C input estimated based on continuous labeling was 1.6 Mg ha−1 after one rice season, of which rhizodeposition accounted for 0.4 Mg C ha−1. Carbon input assessed by pulse labeling was slightly lower (total belowground C input, 1.4 Mg ha−1; rhizodeposition, 0.3 Mg C ha−1; 14 days after labeling). Rice C input after one cropping season was lower than that by upland plants (cereals and grasses, 1.5–2.2 Mg ha−1). In contrast to upland crops, most paddy systems are located in the subtropics and tropics and have two or three cropping seasons per year. We conclude that (1) pulse labeling underestimates the total belowground C input by 15%, compared with that by continuous labeling, and (2) rhizodeposition of rice accounts for approximately 26% of the total belowground C input, regardless of the labeling method used. Based on allocation ratios, we suggest a simple and practical approach for assessment of the gross C input by rice into the soil, for partitioning among pools and for long-term C stabilization in paddies.

Soil acidification is an ongoing problem in intensively cultivated croplands due to inefficient nitrogen (N) fertilization. We collected high-resolution data comprising 19,969 topsoil (0–20 cm) samples from the Land Use and Coverage Area frame Survey (LUCAS) of the European commission in 2009 to calculate the impact of N fertilization on buffering substances such as carbonates and base cations. We have only considered the impacts of mineral fertilizers from the total added N, and a N use efficiency of 60 %. Nitrogen fertilization adds annually 6.1 × 107 kmol H+ to European croplands, leading to annual loss of 6.1 × 109 kg CaCO3. Assuming similar acidification during the last 50 years, carbonates were completely removed from 3.4 × 106 ha of European croplands. In carbonate-free soils, annual loss of 2.1 × 107 kmol of basic cations will lead to strong acidification of at least 2.6 million ha of European croplands within the next 50 years. Inorganic carbon and basic cation losses at such rapid scale tremendously drop the nutrient status and production potential of croplands. Soil liming to ameliorate acidity increases pH only temporarily and with additional financial and environmental costs. Only the direct loss of soil carbonate stocks and compensation of carbonates-related CO2 correspond to about 1.5 % of the proposed budget of the European commission for 2023. Thus, controlling and decreasing soil acidification is crucial to avoid degradation of agricultural soils, which can be done by adopting best management practices and increasing nutrient use efficiency. Regular screening or monitoring of carbonate and base cations contents, especially for soils, where the carbonate stocks are at critical levels are urgently necessary.

No abstract is provided for this article.