Publications

Forest vegetation in western Romania in relation to climate variables: Does community composition reflect modelled tree species distribution?

European beech (Fagus sylvatica L.) is the prevailing tree species of mesic forests in Central Europe. Increasing summer temperatures and decreasing precipitation, as climate change scenarios predict, may, however, negatively influence beech growth and induce a shift to more thermophilous forest communities. Temperatures as expected in the future for western Central Europe are currently found in parts of western Romania. In light of this climate analogy we investigated forest vegetation as an indicator for future vegetation changes in five regions of western Romania representing a climatic gradient. We related species composition to climate variables and examined if tree and understorey species composition respond similarly to the climatic gradient. We further analysed if tree species occurrences correspond with their modelled distance to the rear niche edge. We found evidence for climatic effects on vegetation composition among regions as well as within deciduous and pine forests, respectively. This underlines that vegetation composition is a useful indicator for environmental change. Tree and understorey species compositions were closely linked showing that community-based characterization of forest stands can provide additional information on tree species suitability along environmental gradients. Both, vegetation composition and a climatic marginality index demonstrate the rear niche edge occurrence of beech in the studied sites of Romania and can predict the site suitability for different tree species. While vegetation surveys indicate Quercus petraea to be associated to moderately mesic forests, the marginality index suggested an inner niche position of sessile oak along the climatic gradient. Phytosociological relevés that differentiate between subspecies (or microspecies) of sessile oak with differing habitat requirements should be considered to complement national forest inventories and species distribution maps when modelling rear distribution edges. We conclude that climate driven forest vegetation composition in western Romania is a suitable analogon and may indicate future forest development in western Central Europe.

Resistance of microbial community and its functional sensitivity in the rhizosphere hotspots to drought

Climate change impacts soil microbial communities, activities and functionality. Nonetheless, responses of the microbiome in soil microenvironments with contrasting substrate availability in the rhizosphere to climatic stresses such as drought are largely unknown. To fill this knowledge gap, we coupled soil zymography with site-specific micro-sampling of the soil and subsequent high-throughput sequencing. This helped identify how the bacterial community structure and the genes encoding N-cycling enzymes (leucine aminopeptidase and chitinase) in rhizosphere hotspots and coldspots (microsites with activities in the range of bulk soil but localized within the rhizosphere) of maize respond to drought (20% WHC, two weeks). The elevated activities of leucine aminopeptidase and chitinase in rhizosphere hotspots were caused by the tight collaborative relationships between bacteria and their stable network structure rather than by any significant shift in bacterial community structure or enzyme-encoding gene copies. Despite the similarity in bacterial community structure in soil under drought and optimal moisture, functional predictions indicated the increased relative abundance of genera belonging to Actinobacteria capable of leucine aminopeptidase and chitinase production, especially Streptomyces, Nocardioides, Marmoricola, and Knoellia. Accordingly, the number of gene copies encoded by Actinobacteria for these two enzymes increased by 5.0–17% under drought. Among the bacteria with increased relative abundance under drought, Luedemannella played a crucial role in mediating nutrients and energy fluxes between bacteria. This was reflected in a 35–70% increase in leucine aminopeptidase and chitinase activities under drought. The resistance of enzyme activities to drought was higher in hotpots than that in coldspots. These results revealed that rhizosphere bacterial community composition remained stable, and that the number of gene copies encoded by Actinobacteria responsible for N-cycling enzymes increased under drought. The expected reduction of processes of N cycle was absent. Instead, bacteria increased N mining rate in those hotspots remaining active despite water scarcity.

Visualization of Enzyme Activities in Earthworm Biopores by In Situ Soil Zymography

Earthworms produce biopores with strongly increased microbial and enzyme activities and consequently they form microbial hotspots in soil. In extremely dynamic microhabitats and hotspots such as earthworm biopores, the in situ enzyme activities are a footprint of...

Arbuscular mycorrhiza enhances rhizodeposition and reduces the rhizosphere priming effect on the decomposition of soil organic matter

No abstract is provided for this article.

Carbon fluxes in soil food webs of increasing complexity revealed by 14C labelling and 13C natural abundance

Soil food webs are mainly based on three primary carbon (C) sources: root exudates, litter, and recalcitrant soil organic matter (SOM). These C sources vary in their availability and accessibility to soil organisms, which could lead to different pathways in soil food webs. The presence of three C isotopes (12C, 13C and 14C) offers an unique opportunity to investigate all three C sources simultaneously. In a microcosm experiment we studied the effect of food web complexity on the utilization of the three carbon sources. We choose an incomplete three factorial design with (i) living plants, (ii) litter and (iii) food web complexity. The most complex food web consisted of autochthonous microorganisms, nematodes, collembola, predatory mites, endogeic and anecic earthworms. We traced C from all three sources in soil, in CO2 efflux and in individual organism groups by using maize grown on soil developed under C3 vegetation and application of 14C labelled ryegrass shoots as a litter layer. The presence of living plants had a much greater effect on C pathways than food web complexity. Litter decomposition, measured as 14CO2 efflux, was decreased in the presence of living plants from 71% to 33%. However, living plants increased the incorporation of litter C into microbial biomass and arrested carbon in the litter layer and in the upper soil layer. The only significant effect of food web complexity was on the litter C distribution in the soil layers. In treatments with fungivorous microarthropods (Collembola) the incorporation of litter carbon into mineral soil was reduced. Root exudates as C source were passed through rhizosphere microorganisms to the predator level (at least to the third trophic level). We conclude that living plants strongly affected C flows, directly by being a source of additional C, and indirectly by modifying the existing C flows within the food web including CO2 efflux from the soil and litter decomposition.

Mapping the footprint of nematodes in the rhizosphere: Cluster root formation and spatial distribution of enzyme activities

Nematodes are among the most important pathogens in agriculture, greatly reducing crop biomass and yield. The direct effects of nematodes on above– and belowground plant parts are well known, but the broad range of indirect effects, especially on carbon (C) and phosphorus (P) cycles underground, remains unknown. For the first time, using soil zymography, we analyzed the indirect effects of Meloidogyne incognita cellobiohydrolase and phosphatase. The rhizosphere of lupine (Lupinus polyphyllus L.), a species sensitive to pathogens with high P demand, was selected to study the activity, distribution and localization of two enzymes responsible for C and P cycling: The distribution patterns of cellobiohydrolase and phosphatase demonstrated that M. incognita induced the formation of knots as well as cluster roots, which corresponded to hotspot locations on zymogram images for both enzymes. Increased C release by nematode–infected roots into the soil led to a decrease in the overall activity of cellobiohydrolase and especially at hotspots (by ∼ 20 times). In contrast, the increased P demand of infected plants raised the phosphatase activity, leading to an increase in the rhizosphere extent around the roots and especially of the hotspot area (by 6 times). Remarkably, this 1 mm increase of rhizosphere extent in 2D equals a 2-fold increment in soil volume (3D) for nutrient mobilization. We conclude that nematode infection not only has direct effects by changing root morphology, but also induces a number of subsequent biochemical changes (e.g. enzyme activities and consequently nutrient mobilization) in the rhizosphere, affecting C and P cycling.

The Kobresia pygmaea ecosystem of the Tibetan highlands – Origin, functioning and degradation of the world's largest pastoral alpine ecosystem: Kobresia pastures of Tibet

No abstract is provided for this article.

Arable Land Quality in Developing China: An Integrated Exploration from Global Challenges to Localized Solutions

Ensuring global food security and sustainable development remains a top priority at present [...]

Soil management effects on soil organic matter properties and carbon sequestration (SOMPACS)

PurposeSOMPACS is a project recommended by EJP SOIL for funding under the 1st External Call "Towards Healthy, Resilient and Sustainable Agricultural Soils". The purpose of SOMPACS is to disclose management practices enriching soils with the organic matter pools that are most resistant to microbial decomposition. The project started in 2022 and will be implemented by a consortium of 12 research institutions from Poland, Germany, Ireland, Lithuania, UK, Italy and the USA until 2025.MethodsSoil samples from eight long-term field experiments with different soil management and cultivation systems (conventional tillage vs. no-tillage; mineral vs. organic fertilization; management with and without catch crop; arable land vs. grassland; and cultivated vs. non-cultivated soils) will be investigated. Field experiments will include trials of increasing duration: 22-year (Lithuania); 26-year (Italy); 30-year (Poland, Ireland); 46-year (Poland); 54-year (Lithuania); 100-year (Poland), and 178-year Broadbalk experiment (UK). Experiments will also be carried out in production fields, where additives that stimulate root growth and provide very stable C (commercial humic products, biochar, and biogas digestate) will be applied. The effects of these additives on the content and properties of SOM will be investigated also in experimental plots accompanied by the incubation studies on the microbial decomposition of SOM and these additives. In parallel with soil sampling, plant productivity will be measured in all field experiments. Basic soil properties will be supplemented by the following investigations based on state-of-the-art approaches: SOM composition and stability by Py-GC-MS; aggregate size classes and C pools of increasing physicochemical protection; analysis of δ13C and δ15N of the separated SOM pools; microbiological properties (community-level physiological profiling, selected functional genes involved in C and N cycles, microbiome and mycobiome analyzes by next-generation sequencing, genetic diversity using terminal restriction fragment length polymorphism);  enzymatic activity; soil water retention and soil water repellency; mineral composition of clay fraction; soil structure stability. The most resistant SOM pool (humin) will be isolated by different methods (isolation vs. extraction) and examined for chemical composition and structure, using spectrometric and spectroscopic techniques (mass spectrometry, NMR, FTIR, EPR, UV-Vis-NIR, fluorescence). The C stocks in the soil profile will be evaluated and the extractable C in cold water will be determined to assess the potential leaching and microbial availability of C. Additionally, CO2 emissions from the soil of chosen experiments will be measured directly under field conditions.ResultsIn the first stage of the research, soil samples were collected from a depth up to 100 cm and the humin fraction from surface horizons was isolated for spectroscopic studies. Meantime, the impact of various types of cultivation on the yield was determined. ConclusionsA closer understanding of the persistence of SOC in top- and subsoil, as well as identifying management practices that contribute to minimizing greenhouse gas emissions, will show the possibilities of increasing the stable SOM pools, thus improving the potential of C sequestration. Understanding the impact of soil management on sustainable agricultural production and the environment, and in particular on climate change mitigation, should be widely promoted and put into practice.

Tracing C Fluxes through the Metabolic Network of Soil Microbial Communities by Position-Specific Labeling

No abstract is provided for this article.

Hotspots in the rhizosphere

No abstract is provided for this article.

The third international conference “Emission and Sinks of Greenhouse Gases in Northern Eurasia”

Deciphering microbial drivers of soil organic matter mineralization in surface and subsurface soil during long-term vegetation succession

Separation of root and rhizomicrobial respiration by natural 13C abundance: Theoretical approach, advantages and difficulties

This contribution provides an elaboration of the theoretical background of an easy procedure allow- ing quantitative separate estimation of root respiration and rhizomicrobial respiration in nonsterile soils. The method is based on 13 C natural abundance by growing C 4 plants on C 3 soil or vice versa. Four δ 13 C values are necessary: of the soil organic matter, of the roots, of the soil microbial biomass, and of CO 2 efflux from the soil. The advantages and assumptions of the new approach, as well as possible applications including FACE systems and continuous labeling ( 13 C or 14 C) experiments are discussed. It is expected that the new method will become the standard procedure for separate estimation of root respiration (=respiration of autotroph organisms) and rhi- zomicrobial respiration (=respiration of heterotroph organisms) in nonsterile soils.

Rice paddy soils are a quantitatively important carbon store according to a global synthesis

Overview of all experimental observations from global rice field experiments that were used for calculating paddy SOC stocks and the meta-analysis.

Spatiotemporal patterns of enzyme activities in the rhizosphere: effects of plant growth and root morphology

Lentil and lupine, having contrasting root morphologies, were chosen to investigate the effects of plant growth and root morphology on the spatial distribu

From Position-Specific Labeling to Environmental Fluxomics: Elucidating Biogeochemical Cycles from the Metabolic Perspective (BG Division Outstanding ECS Award Lecture)

No abstract is provided for this article.

Carbon Use Efficiency: Universal approach to link microbial growth, death, turnover and maintenance in steady state ecosystems

No abstract is provided for this article.

Degradation mechanisms and consequences for SOC stocks for the world's largest alpine pastoral ecosystem on the Tibetan Plateau

Approximately 1.5 million km² of the Tibetan Plateau are covered with grasslands. Thereof one third is occupied by the world’s largest pastoral alpine ecosystem (Kobresia pastures). Paleo-records indicate the grazing-induced origin of this ecosystem since more than 8000 years or at least since yak domestication since 4000 years. Long-term moderate grazing by yak and sheep increased belowground C allocation of Kobresia pygmaea, caused the development of dense root-mats and finally lead to an accumulation of soil organic carbon (SOC) and nutrients such as nitrogen (N) and phosphorus (P) in the topsoil. These pastures, however, are increasingly affected by large-scale degradation caused by overgrazing of these highly sensitive ecosystems. Loss of the topsoil threatens several ecosystem functions: i.e. SOC and nutrient storage, biodiversity, provision of grazing-ground and supply of clean water for large parts of SE-Asia. Here, we present a conceptual model and results of degradation processes combining anthropogenic and natural amplifications. To evaluate losses of SOC and nutrients we synthesize field observations and surveys in the highlands and validates this with own analyses in the Kobresia core area. We show that drought- and frost-induced polygonal cracking opens the root-mats, already weakened by overgrazing. This initiates a dying of the Kobresia turf, extends the surface cracks, triggers soil erosion and promotes SOC mineralization and leaching losses. Soil erosion caused further high losses of SOC and nutrients from the topsoil (i.e. 0-10 cm: ~5.1 kg C m-2), whereas SOC loss beneath the surface cracks was primary caused by both, decreasing C-input and SOC mineralization (mineralization-derived SOC loss: ~2.5 kg C m-2). The root biomass decreased with intensity of pasture degradation and lower C input constrains the ecosystem recovery. A negative δ13C shift of SOC reflected intensive decomposition and corresponded to a relative enrichment of 13C depleted lignin components. In sum, degradation triggered high SOC loss (up to 70% of intact soil in 0-30 cm: ~7.6 kg C m-2) from this ecosystem with profound consequences for carbon sequestration, atmospheric CO2, water quality and ecosystem stability.