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Utilization of nitrogen in the form of either nitrate (NO 3 − ) or ammonium (NH 4 + ) ions may affect the carbohydrate metabolism and energy budget o
Distribution and diffusion of root exudates of Zea mays were studied in a loamy Haplic Luvisol by means of 14CO2 pulse labelling of shoots in two-compartment pots, in which the roots were separated from sterile or nonsterile soil by a screen. Root hairs but not roots could penetrate the screen into the soil. Root-free soil in the bottom pot compartment of one treatment was sterilized with cycloheximide and streptomycin to inhibit microbial decomposition of exudates. The soil from the bottom part of the pots was frozen and sliced by a microtome into 15 layers, each 1 mm thick. Four zones of exudate concentrations were found according to the distribution of the 14C activity in the rhizosphere profile: 1) 1…2 (3) mm: maximal concentration of exudates around root hairs; 2) 3…5 mm: presence of exudates is caused by their diffusion from the root hairs; 3) 6… 10 mm: insignificant amounts of exudates diffused from the previous zones; 4) > 10 mm: complete lack of exudates. The amount of 14C exudates was higher in the first 1-mm layer from the roots of nonsterile soil compared to the sterile soil due to stimulation of exudation by microorganisms. The coefficient of vertical exudate diffusion in the soil was 1.9 × 10•7 cm2/Vs.
No abstract is provided for this article.
This study describes a novel approach to separate three soil carbon (C) sources by one tracer method (here 13C natural abundance). The approach is based on the combination of C3 and C4 sources in different treatments, identical decomposition of C3 and C4 substances in soil, and subsequent calculation of their contribution to the total CO2 efflux. We used the temporal dynamics of the CO2 efflux from a C3 grassland soil amended with added C3 or C4 slurry and/or C3 or C4 sugar to estimate contributions of three separate C sources: native soil organic matter (SOM), slurry and sugar, to CO2 efflux. Soil with slurry and/or sugar was incubated under controlled conditions, and concentration and delta13C values of evolved CO2 were measured over a 2-week period. The main assumption needed for separation of three C sources in CO2 efflux, i.e. identical decomposition of applied C3 and C4 sugars in soil, was investigated and proven. The relative contribution to the CO2 efflux increased, but its duration decreased with an increased microbial availability of the C source, i.e. sugar > slurry > SOM. The microorganisms used the C sources according to their availability. The contribution of sugar to the CO2 efflux was finished after 2-4 days. Separation of three CO2 sources and comparison of CO2 from different treatments tracing the changes of SOM and slurry decomposition induced by addition of sugar were investigated. During the sugar decomposition (the first 2-4 days), the SOM decomposition strongly decreased. At the same time the contribution of slurry-C to CO2 increased. The shortcomings and limitations as well as possible future applications of the suggested method including FACE (Free Air Carbon dioxide Enrichments) and continuous labelling experiments are discussed.
Anaerobic oxidation of methane (AOM) is a globally important CH4 sink. However, the AOM pathways in paddy soils, the largest agricultural source of methane emissions (31 Mio tons per year) are not yet well described. Here, a combination of 13C isotope tracer, phospholipid fatty acids (PLFA) analyses, and microbial community analysis was used to identify AOM pathways in fertilized (pig manure, biochar, NPK, and the control) paddy soils amended with alternative electron acceptors (AEAs) (NO3 −, Fe3+, SO4 2−, humic acids, and the reference without AEAs addition). After 84 days of anaerobic incubation, the microbial co-occurrence network got tightened and became more complex relative to unincubated samples. Fertilization and AEAs addition led to a strong divergence of the microbial community structure as indicated by abundances of AOM-related microbiota and 13C incorporation into microbial PLFA, thus suggesting an environmental niche differentiation of AOM-involved microorganisms. Comparative analyses revealed a set of major and minor AOM pathways with synergistic relations to complementary anaerobic microbial groups. NO3 −-driven AOM, performed by members of the candidate group ANME-2d, was the major AOM pathway. Minor AOM pathways involved NO2 − reduction by NC10, reduction of humic acids and Fe3+ by Geobacter species, and SO4 2− reduction by sulfate-reducing bacteria linked with anaerobic methanotrophs. As identified by the network analysis, these active AOM pathways compensated a fraction of CH4 produced during ongoing methanogenesis. From a broader ecological perspective, nitrogen-driven AOM will become a more important methane sink in the future with the increases of nitrogen fertilization and deposition.
No abstract is provided for this article.
While intensive fertilization has wide-ranging impact on microbial communities, its effects on microbial recolonization of soil niches and associated enzym