3,134 publications from this institution
Hybrid nanostructures composed of metal nanoparticles and metal‐organic frameworks (MOFs) have recently received increasing attention toward various applications due to the combination of optical and catalytic properties of nanometals with the large internal surface area, tunable crystal porosity and unique chemical properties of MOFs. Encapsulation of metal nanoparticles of well‐defined shapes into porous MOFs in a core–shell type configuration can thus lead to enhanced stability and selectivity in applications such as sensing or catalysis. In this study, the encapsulation of single noble metal nanoparticles with arbitrary shapes within zeolitic imidazolate‐based metal organic frameworks (ZIF‐8) is demonstrated. The synthetic strategy is based on the enhanced interaction between ZIF‐8 nanocrystals and metal nanoparticle surfaces covered by quaternary ammonium surfactants. High resolution electron microscopy and tomography confirm a complete core–shell morphology. Such a well‐defined morphology allowed us to study the transport of guest molecules through the ZIF‐8 porous shell by means of surface‐enhanced Raman scattering by the metal cores. The results demonstrate that even molecules larger than the ZIF‐8 aperture and pore size may be able to diffuse through the framework and reach the metal core.
Genetically diverse pathogens (such as Human Immunodeficiency virus type 1, HIV-1) are frequently stratified into phylogenetically or immunologically defined subtypes for classification purposes. Computational identification of such subtypes is helpful in surveillance, epidemiological analysis and detection of novel variants, e.g., circulating recombinant forms in HIV-1. A number of conceptually and technically different techniques have been proposed for determining the subtype of a query sequence, but there is not a universally optimal approach. We present a model-based phylogenetic method for automatically subtyping an HIV-1 (or other viral or bacterial) sequence, mapping the location of breakpoints and assigning parental sequences in recombinant strains as well as computing confidence levels for the inferred quantities. Our Subtype Classification Using Evolutionary ALgorithms (SCUEAL) procedure is shown to perform very well in a variety of simulation scenarios, runs in parallel when multiple sequences are being screened, and matches or exceeds the performance of existing approaches on typical empirical cases. We applied SCUEAL to all available polymerase (pol) sequences from two large databases, the Stanford Drug Resistance database and the UK HIV Drug Resistance Database. Comparing with subtypes which had previously been assigned revealed that a minor but substantial (approximately 5%) fraction of pure subtype sequences may in fact be within- or inter-subtype recombinants. A free implementation of SCUEAL is provided as a module for the HyPhy package and the Datamonkey web server. Our method is especially useful when an accurate automatic classification of an unknown strain is desired, and is positioned to complement and extend faster but less accurate methods. Given the increasingly frequent use of HIV subtype information in studies focusing on the effect of subtype on treatment, clinical outcome, pathogenicity and vaccine design, the importance of accurate, robust and extensible subtyping procedures is clear.
Abstract The northeastern Atlantic spiny spider crab occurs from the British Islands to Senegal, where it is an important fishery resource. From morphological characters this crab has recently been proposed as a distinct species, Maja brachydactyla, although for commercial purposes it is still considered the same species as its Mediterranean congener M. squinado. We have studied variation at two mitochondrial genes in several crab populations from the Atlantic (putatively M. brachydactyla) and Mediterranean (M. squinado and M. crispata) basins, in order to clarify the taxonomic status of this crab in the northeastern Atlantic and Mediterranean regions. Phylogenetic analysis revealed that each of these three taxa forms a distinct and well-defined clade. While the divergence within each taxon was 0% for 16S and 0-0.3% for COI, divergence between taxa was 0.6-2.5% for 16S and 5.3-8.7% for COI; values that are in the range of the differences observed between other crustacean species. These results confirm the genetic distinctiveness of each taxa and support their designation as different species. Therefore, the Atlantic spider crab should be referred as M. brachydactyla, a fact that should be taken into account for conservation and commercial purposes.
Our results suggest that, at wobble sites of tRNA anticodons in vertebrate mitogenomes, selection favors the most versatile nucleotide in terms of wobble base-pairing stability and that wobble site composition is not influenced by codon usage. These results are in agreement with the "wobble versatility hypothesis".
Abstract Equalization of parental contributions is one of the most simple and widely recognized methods to maintain genetic diversity in conservation programs, as it halves the rate of increase in inbreeding and genetic drift. It has, however, the negative side effect of implying a reduced intensity of natural selection so that deleterious genes are less efficiently removed from the population with possible negative consequences on the reproductive capacity of the individuals. Theoretical results suggest that the lower fitness resulting from equalization of family sizes relative to that for free contribution schemes is expected to be substantial only for relatively large population sizes and after many generations. We present a long-term experiment with Drosophila melanogaster, comparing the fitness performance of lines maintained with equalization of contributions (EC) and others maintained with no management (NM), allowing for free matings and contributions from parents. Two (five) replicates of size N = 100 (20) individuals of each type of line were maintained for 38 generations. As expected, EC lines retained higher gene diversity and allelic richness for four microsatellite markers and a higher heritability for sternopleural bristle number. Measures of life-history traits, such as egg-to-adult viability, mating success, and global fitness declined with generations, but no significant differences were observed between EC and NM lines. Our results, therefore, provide no evidence to suggest that equalization of family sizes entails a disadvantage on the reproductive capacity of conserved populations in comparison with no management procedures, even after long periods of captivity.
The consumption of exotic fruits is rapidly increasing in European countries. Some of these products have attracted much interest due to their alleged properties of preventing malnutrition, over‐nutrition, and disease, maintaining a healthy body. Scientific studies on these fruits are multiplying, including chemical characterizations and biological investigations on in vitro and in vivo experimental models. This review concerns four edible fruits: Hylocereus undatus (dragon fruit), Annona cherimola (cherimoya), Citrus australasica (finger lime), and Averrhoa carambola (carambola or star fruit). By screening biomedical databases, viz. Scopus, WOS, and PubMed, a total of 131 papers have been selected. Data reveals a wide series of biological effects that confirm traditional medicinal uses or suggest new therapeutic applications. Most studies concern problems related to nutrition, such as body redox balance, metabolic syndrome, and hepatoprotective effects, but other properties have been highlighted, including anticancer, antimicrobial, anti‐inflammatory, and neuroprotective effects, as well as cardiovascular and skin protection. Pharmacological investigations have also been focused on specific compounds, assuming a potential role in drug discovery. In summary, food products, byproducts, and single compounds derived from these plants could be exploited in the prevention of disease or for specific treatments of health problems.
