Microbial and enzyme activities can be used to identify and assess the impacts of changes in land use management on soil quality. However, only few studies have investigated the effects of land use and nutrient additions on enzyme activities and microbial processes in tropical African soils. Glucose and nutrients (N and P) were added to soils (0–20 cm) from natural and agricultural ecosystems: (1) savannah, (2) maize fields, (3) lower montane forest, (4) coffee plantation, (5) grasslands (6) Chagga homegardens common at Mt. Kilimanjaro region and East Africa. Microbial biomass and activities of β-glucosidase, cellobiohydrolase, chitinase and phosphatase were monitored over 60 days incubation period. Microbial biomass content and enzyme activities were generally higher in soils under natural vegetation compared to corresponding agricultural soils. Decline in microbial biomass C content over time was higher in natural ecosystems compared to agricultural soils. However, the microbial biomass C content in Chagga homegarden soils was relatively stable. Land use was negatively correlated to β-glucosidase, cellobiohydrolase and chitinase activity, but positively correlated to phosphatase activity. β-glucosidase and cellobiohydrolase, involved in the C-cycle, were the most sensitive to landuse change. Chitinase activity was 2–6 times higher in soils under natural vegetation compared to corresponding arable soils. Phosphatase displayed very high activities in all land use types. This is attributed to the high P retention capacity common for andic soils similar to those occurring at Mt. Kilimanjaro region. Increased P availability stimulated enzyme activities in lower montane forest and Chagga homegarden soils. Overall, microbial biomass and enzyme activities showed a strong decrease with increased land use intensity and should therefore be taken into consideration in monitoring and assessing the impact of land use change at Mt. Kilimanjaro region.
This review summarizes the most important methodological developments and applications of soil zymography – the technique used to visualize enzyme activities in soil to identify and localize hotspots. After the first application of fluorogenic substrates for enzyme activity imaging in soil 10 years ago, zymography has been used in many studies. This reflects its universality, simplicity and visualization of the hidden microbial and root life in soil, which is a very heterogeneous and “dark” environment. After a short description of zymography background, we present the 10-year advances in the spectrum of enzyme activity imaging, zymography resolution, standardization and hotspot identification. A special focus is placed on combining the zymography with visualizing the localization of soil acidification, root exudation, pore distribution, nutrient and water fluxes. To date, most applications have been related to enzyme activities in the rhizosphere to visualize plant-soil-microbial interactions. Here, we go a step further and show many other important directions (i.e., biopores, detritusphere, microplastisphere) to identify the heterogeneity and localize hotspots of microbial activities and processes in soil. The past progress, current possibilities and challenges, as well as future perspectives of soil zymography are discussed. Soil zymography is widely applicable in natural and agricultural ecosystems in the field and in laboratory studies, scaling down from the whole root system (dm) to microbial communities (μm). In the decade ahead, enzyme research and specifically zymography imaging will continue to expand microbial studies and hotspot localization. This will involve intersecting with (bio)chemical, physico-chemical, microbial cell imaging and isotope applications. In summary, over the past 10 years, zymography based on fluorogenic substrates has illuminated the hidden microbial transformations of nutrients in soil hotspots. This has opened new ways to combine the localization of microbial processes with physico-chemical soil heterogeneity, and to identify the biochemical prerequisites for hotspot formation in soil.
No abstract is provided for this article.
Kobresia pastures on the Tibetan Plateau are the largest alpine pastoral ecosystems. Kobresia pastures have experienced severe degradation in recent decades, inducing large nitrogen (N) losses from these ecosystems. This is particularly problematic, as it intensifies prevailing N limitation in these regions. Simultaneously, anthropogenic N deposition has increased across these ecosystems, but the fate of added N on variously degraded Kobresia pastures remains unclear. Kobresia pastures of three degradation stages were investigated: living, dying and dead root mats. High and very low (as a tracer) amounts of 15 N‐labelled ammonium nitrate (NH 4 NO 3 ) were applied to root mats under controlled conditions. Leaching was simulated over 3 months, and 15 N recovery was measured in the plant–soil system. N addition promoted aboveground biomass and foliar N content of Kobresia during the early growth period, indicating a short‐term offset of N limitation. After 7–8 weeks, plant growth and 15 N uptake were reduced in plants with initial N addition, reflecting a transition to N limitation induced by N uptake and leaching from soil. This limitation was also indicated by the strong decline of NO 3 − in leachates from living root mats compared with degraded root mats. Leaching N losses from dying and dead root mats increased 2⋅2 and 6⋅3 times, respectively, compared with those of living root mats. We conclude that N addition can facilitate plant growth in living root mats but contributes to N leaching in degraded pastures. This contribution to N leaching may weaken ecosystem recovery, increase NO 3 − loading of adjacent lower landscape parts and cause eutrophication of aquatic ecosystems. Copyright © 2017 John Wiley & Sons, Ltd.
No abstract is provided for this article.
No abstract is provided for this article.
Identification of the mechanisms contributing to nitrogen (N) fertilizer-induced changes in CO2 efflux from soil under agricultural crops has been extremely challenging because of difficulties in separating root and microbial contribution to total CO2 efflux. In this study we present the evidence that high costs of nitrate reduction result in a strong increase of root-derived respiration and the magnitude of an increase differs between the species with various contribution of shoots and roots to the nitrate reduction process. Fertilization of Lupinus albus and Zea mays with nitrate or ammonium and pulse labeling of plants in 14CO2 atmosphere allowed evaluation of the effect of N type on total and recently assimilated CO2 efflux from soil. Addition of nitrate to planted soil increased recently assimilated CO2 efflux by 168% in Lupinus albus (nitrate reduction site – in roots) and by 121% in Zea mays (nitrate reduction site both, in shoots and roots) in comparison with control. Ammonium-induced CO2 increase amounted for 82% in Lupinus albus and for 73% in Zea mays. Clear diurnal changes in CO2 efflux from planted soil at constant day/night temperature showed fast response of below-ground processes to photosynthesis. Both approaches for root-derived CO2 assessment: 14C pulse labeling and difference of CO2 from planted and unplanted soil showed similar results: the form of N supply and the location of the nitrate reduction site have a strong significant effect on the amount of root-derived CO2 respiration.
Dataset for the article: Mason-Jones, K., Schmücker, N., Kuzyakov, Y. (2018) Contrasting Effects of Organic and Mineral Nitrogen Challenge the N-Mining Hypothesis for Soil Organic Matter Priming. Soil Biology and Biochemistry 124, 38-46, https://doi.org/10.1016/j.soilbio.2018.05.024
Although soil microorganisms spend most of their lifetime at dormant or resting states, they are quickly activated by substrate input and easily switch to growth. Under steady-state, the double-stranded DNA (dsDNA) content is considered as a measure of total microbial biomass while the RNA content mainly indicates the active microbial fraction. In growing population, however, an increase in DNA is solely related to replication of microbial cells, while the RNA, besides growth, is also involved in non-growth processes. Therefore, the dsDNA and RNA content increase differently during microbial growth, applying the RNA:dsDNA ratio as promising indicator of growth-related and non-growth microbial activity. To what extend the ratio can be used to comparatively infer investment in microbial biomass production versus maintenance-related synthesis following substrate induction remains to be studied. We measured the RNA:dsDNA ratios of representative soil types of four different ecozones before and after glucose addition to prove the prediction capacity of physiological status of soil microorganisms. The RNA:dsDNA ratio remained stable after activation of microorganisms in Retisol and Luvisol indicating balanced growth. In contrast, very moderate increase in DNA in sandy Calcisol was accompanied by disproportionally high increase in RNA. As a result, the RNA:dsDNA ratio in Calcisol with low nutrient status increased by 36-fold after glucose amendment, indicating strong non-growth related processes. The RNA recovery decreased exponentially with increasing clay content, indicating the strong association to the textures of the soil types. This suggests, that the underestimation of RNA yields in clayey soils biased the RNA:dsDNA ratio, and subsequently the physiological state of the microbial community is not adequately represented in soils clay contents exceeding 30%. Monitoring the relative changes in dynamics are required to overcome the restricted applicability of RNA:dsDNA ratio in soils with high clay content.