Anaerobic oxidation of methane (AOM) is a globally important CH4 sink. However, the AOM pathways in paddy soils, the largest agricultural source of methane emissions (31 Mio tons per year) are not yet well described. Here, a combination of 13C isotope tracer, phospholipid fatty acids (PLFA) analyses, and microbial community analysis was used to identify AOM pathways in fertilized (pig manure, biochar, NPK, and the control) paddy soils amended with alternative electron acceptors (AEAs) (NO3 −, Fe3+, SO4 2−, humic acids, and the reference without AEAs addition). After 84 days of anaerobic incubation, the microbial co-occurrence network got tightened and became more complex relative to unincubated samples. Fertilization and AEAs addition led to a strong divergence of the microbial community structure as indicated by abundances of AOM-related microbiota and 13C incorporation into microbial PLFA, thus suggesting an environmental niche differentiation of AOM-involved microorganisms. Comparative analyses revealed a set of major and minor AOM pathways with synergistic relations to complementary anaerobic microbial groups. NO3 −-driven AOM, performed by members of the candidate group ANME-2d, was the major AOM pathway. Minor AOM pathways involved NO2 − reduction by NC10, reduction of humic acids and Fe3+ by Geobacter species, and SO4 2− reduction by sulfate-reducing bacteria linked with anaerobic methanotrophs. As identified by the network analysis, these active AOM pathways compensated a fraction of CH4 produced during ongoing methanogenesis. From a broader ecological perspective, nitrogen-driven AOM will become a more important methane sink in the future with the increases of nitrogen fertilization and deposition.
Priming of soil organic matter decomposition has attracted much research interest, yet a conclusive mechanistic explanation of the phenomenon remains elusive. One proposal is that low molecular weight organic substances might “trigger” an acceleration of microbial metabolism. For the first time, we applied a glucose analogue to soil to demonstrate triggering of microbial metabolism, and to estimate its relative contribution to priming. “Non-metabolizable” glucose analogues have been widely used in pure culture studies to mimic glucose, but never in soil biochemistry. We hypothesized that analogue molecules will elicit a metabolic response in microorganisms despite limited catabolism, and thereby confirm the proposed triggering. The effect of 14C-labeled 3-O-methyl-d-glucose (OMG) – a common “non-metabolizable” glucose analogue – on soil organic matter mineralization was compared to that of 14C-labeled d-glucose. OMG was mineralized, but its mineralization was initially impeded and substantially delayed, relative to glucose. OMG caused brief but strong priming in the first 24 h, increasing unlabeled CO2 efflux by 173%, 89% and 36% above control for additions of 0.49, 2.4 and 4.9 μmol OMG g−1 soil, respectively. In contrast, glucose caused low or negative priming on the first day. On the first day after OMG addition, a negative correlation between priming and OMG mineralization indicated that triggering is a valid mechanism of microbial activation during a famine-feast transition, but is short-lived. Glucose mineralization peaked on the second day for medium and high additions, coinciding with peaks in positive priming. Maximum substrate mineralization also coincided with peaks in priming for medium and high OMG levels, but these occurred 9 and 11 days after addition, respectively. This revealed non-triggering priming mechanisms, which contributed most to priming and were closely coupled to substrate mineralization. By separating energy- and substrate-dependent metabolic processes from triggering processes, the glucose analogue 3-O-methyl-d-glucose enabled triggering to be demonstrated, but triggering by glucose occurs without contributing greatly to priming.
<p>Microbial transformation of organic substances is a key process of soil organic matter (SOM) formation. Carbon (C) entering the soil can be transformed in three main directions: i) stabilization over long period without relevant microbial utilization, ii) recycling by microorganisms for production of new and reparation of old cells, and iii) microbial utilization for energy production leading to C losses from soil as CO<sub>2</sub>. So, individual compounds within huge diversity of the organic substances entering the soil will follow predominantly one of these directions, depending on the substance chemistry, soil properties, microbial activities and environmental conditions. Therefore, organic substances can have two general trends: i) they converge from any initially distinct compounds (e.g. in litter or rhizodeposition) to completely mixed, so that it is impossible to trace back their origin; or ii) divergence: the substances maintain their differences despite microbial transformations by SOM formation.</p><p>We proved two opposite hypotheses that convergence and divergence of the fate of organic substances depends on microbial utilization at two levels: 1) intermolecular: high recycling intensity leads to convergence, whereas stabilization leads to divergence of the C originated from various organic compounds, and 2) incorporation of C from various molecule positions into microbial metabolic cycles define the C fate at intramolecular level. We tested the first hypothesis based on own and literature data to the fate of polymeric substances: sugars, proteins, lipids and lignin. The second hypothesis was tested by the C atoms from various positions of pentoses and hexoses by position-specific <sup>13</sup>C and <sup>14</sup>C labeling.</p><p>The polymeric substances as well as monomers from the same chemical group clearly converge to three groups stabilization, recycling and losses. Carboxylic acids will be nearly completely mineralized and are lost from soil. The fate and functions organic compounds depend mainly on microbial recycling. Proteins, amino acids and sugars - key components of microbial biomass - are intensively recycled and e.g. proteins remain relatively long in soil.</p><p>For the intramolecular differences, we traced the fate of position-specific <sup>13</sup>C labeled glucose and ribose under field conditions for 800 days. Both sugars were simultaneously metabolized via glycolysis and pentose phosphate pathway. The similarity between position-specific <sup>13</sup>C recovery in microbial biomass and soil reflected high contribution of microbial necromass to SOM. The mean residence time of uniformly labeled <sup>13</sup>C ribose in the soil was 3 times longer than that of glucose. Consequently, ribose and glucose were incorporated into different cellular components, defining their long-term fate in soil. The convergence of glucose C positions in soil and microbial biomass revealed that recycling dominated glucose transformation. In contrast, divergence of ribose C positions in soil revealed that intact ribose-derived cell components are reused or preserved in SOM.</p><p>Thus, convergence vs. divergence distinguished the two general trends explaining the long persistence of C at inter- and intra-molecular levels: microbial recycling leads to convergence, whereas slow decomposition and preservation define the divergence of C pathways in soil.</p>
Tropical mountain ecosystems cover a broad variety of climatic and vegetation zones and are global hotspots of biodiversity. These ecosystems are severely threatened by climate and land-use change, which also strongly affect soil properties. Mt. Kilimanjaro, with its large elevation gradient and relatively homogeneous geology of volcanic rocks and ashes, provides a unique opportunity to study and interpret soil organic matter (SOM) responses to climatic changes. Our objectives were to identify key SOM compounds in six elevation zones (covering ecosystems from tropical dry-lowland, through montane forest, up to alpine heathlands) that are affected by the climatic changes along a 3400 m transect, and to relate these SOM changes to ecosystem specific characteristics. The SOM composition in four topsoils (0–10 cm) samples per ecosystem was characterized by analytical double-shot pyrolysis-gas chromatography–mass spectrometry (Py-GC/MS). Evolving-gas analysis-mass spectrometry (EGA-MS) was used to quantitatively compare the thermal desorption (first shot: <280 °C) and pyrolysis step (second shot: 280–600 °C). The percentage of thermally desorbed compounds increased 10 fold from lowland (<900 m) to mountain forest soils (>2000 m), followed by a 40% decrease in alpine ecosystems (>4000 m). Alkanes/-enes/-ols contributed between 4% and 30% to the identified SOM composition, with a maximum at mid elevation (2120 m). Fatty acids and fatty acid esters contributed with <3% to SOM composition and decreased to a minimum of <1% at Podocarpus forest soils (2900 m), followed by a re-increase at higher elevation. The percentage of lignin-derived compounds followed a similar pattern but also responded to reduced woody inputs above the tree line. Two main factors that seem to affect SOM quality and composition at Mt. Kilimanjaro were: 1) the rate and composition of organic matter inputs that in turn are controlled by climatic characteristics and the vegetation type and 2) the decomposition rate and efficiency, mainly controlled by soil pH, temperature and water availability. High forest productivity at mid elevations (2200 m) leads to high amounts of volatile compounds and increases stable SOM pools. The overall carbon accumulation in Andosols of Mt. Kilimanjaro is linked to the percentage of bound lipids (mainly alkanes, alkenes and alcohols), while site specific input patterns (e.g. vegetation or wild fires) are strongly reflected by sterols, lignin derived compounds or polycyclic aromatic compounds in SOM.
No abstract is provided for this article.
The objective of the investigation was to evaluate the effect of immobilizing substances and NaCl salinity on the availability of heavy metals: Zn, Cd, Cu, Ni, and Pb to wheat (Triticum aestivum L.). In greenhouse pot experiment, a sewage sludge amended soil was treated with the following immobilizing substances: three clay minerals (Na-bentonite, Ca-bentonite and zeolite), iron oxides (goethite and hematite), and phosphate fertilizers (superphosphate and Novaphos). The pots were planted with wheat and were irrigated either with deionized or saline water containing 1600 mg L−1 NaCl. Wheat was harvested two times for shoot metal concentrations and biomass measurements. Metal species in soil solution were estimated using the software MINEQL+. The addition of metal immobilizing substances to the soil significantly decreased metal availability to wheat. The largest reduction in metal bioavailability was found for bentonites. The irrigation with saline water (1600 mg L−1 NaCl) resulted in a significant increase in metal chloride species (MCl+ and MCl2 0). The highest metal complexation with Cl occurred for Cd, which was about 53% of its total soil solution concentration. The total concentration of Cd (CdT) in soil solution increased by 1.6–2.8-fold due to saline water. The NaCl salinity caused a significant increase in uptake and shoot concentration of Cd for two harvests and small but significant increase in shoot Pb concentration for the second harvest. It was concluded that the use of bentonites is the most promising for the reduction of heavy metal availability to plants. Saline water containing 1600 mg L− 1 NaCl increased the availability of Cd and Pb to wheat and decreased the efficiency of bentonites to immobilize soluble Cd. Keywords: Heavy metal speciesclay minerals (Na-bentonite, Ca-bentonite, and zeolite)iron oxidesphosphate fertilizersNaCl salinityheavy metals uptake. We thank Dr. A. Lehmann for the information provided about the contaminated soil, and Dr. M. Zarei and D. Frobel for analysis of clay mineralogy. We are very thankful to Fa. IKO Minerals GmbH for using their bentonites and zeolite and Bayer for using its Fe-Oxides. We are very thankful to the reviewers for the useful comments. This work was partly funded by the Egyptian government.
