Gas exchange techniques were used to investigate light-saturated carbon assimilation and its stomatal and non-stomatal limitations over two seasons in mature trees of five species in a closed deciduous forest. Stomatal and non-stomatal contributions to decreases in assimilation resulting from leaf age and drought were quantified relative to the maximum rates obtained early in the season at optimal soil water contents. Although carbon assimilation, stomatal conductance and photosynthetic capacity (V(cmax)) decreased with leaf age, decreases in V(cmax) accounted for about 75% of the leaf-age related reduction in light-saturated assimilation rates, with a secondary role for stomatal conductance (around 25%). However, when considered independently from leaf age, the drought response was dominated by stomatal limitations, accounting for about 75% of the total limitation. Some of the analytical difficulties associated with computing limitation partitioning are discussed, including path dependence, patchy stomatal closure and diffusion in the mesophyll. Although these considerations may introduce errors in our estimates, our analysis establishes some reasonable boundaries on relative limitations and shows differences between drought and non-drought years. Estimating seasonal limitations under natural conditions, as shown in this study, provides a useful basis for comparing limitation processes between years and species.

Policies for climate mitigation on land rarely acknowledge biophysical factors, such as reflectivity, evaporation, and surface roughness. Yet such factors can alter temperatures much more than carbon sequestration does, and often in a conflicting way. We outline a framework for examining biophysical factors in mitigation policies and provide some best-practice recommendations based on that framework. Tropical projects—avoided deforestation, forest restoration, and afforestation—provide the greatest climate value, because carbon storage and biophysics align to cool the Earth. In contrast, the climate benefits of carbon storage are often counteracted in boreal and other snow-covered regions, where darker trees trap more heat than snow does. Managers can increase the climate benefit of some forest projects by using more reflective and deciduous species and through urban forestry projects that reduce energy use. Ignoring biophysical interactions could result in millions of dollars being invested in some mitigation projects that provide little climate benefit or, worse, are counter-productive.

Measurements of soil‐surface CO 2 fluxes are important for characterizing the carbon budget of boreal forests because these fluxes can be the second largest component of the budget. Several methods for measuring soil‐surface CO 2 fluxes are available: (1) closed‐dynamic‐chamber systems, (2) closed‐static‐chamber systems, (3) open‐chamber systems, and (4) eddy covariance systems. This paper presents a field comparison of six individual systems for measuring soil‐surface CO 2 fluxes with each of the four basic system types represented. A single system is used as a reference and compared to each of the other systems individually in black spruce (Picea mariana), jack pine (Pinus banksiana), or aspen (Populus tremuloides) forests. Fluxes vary from 1 to 10 μmol CO 2 m −2 s −1 . Adjustment factors to bring all of the systems into agreement vary from 0.93 to 1.45 with an uncertainty of about 10–15%.

Summary Synthesis of results from several Arctic and boreal research programmes provides evidence for the strong role of high‐latitude ecosystems in the climate system. Average surface air temperature has increased 0.3 °C per decade during the twentieth century in the western North American Arctic and boreal forest zones. Precipitation has also increased, but changes in soil moisture are uncertain. Disturbance rates have increased in the boreal forest; for example, there has been a doubling of the area burned in North America in the past 20 years. The disturbance regime in tundra may not have changed. Tundra has a 3–6‐fold higher winter albedo than boreal forest, but summer albedo and energy partitioning differ more strongly among ecosystems within either tundra or boreal forest than between these two biomes. This indicates a need to improve our understanding of vegetation dynamics within, as well as between, biomes. If regional surface warming were to continue, changes in albedo and energy absorption would likely act as a positive feedback to regional warming due to earlier melting of snow and, over the long term, the northward movement of treeline. Surface drying and a change in dominance from mosses to vascular plants would also enhance sensible heat flux and regional warming in tundra. In the boreal forest of western North America, deciduous forests have twice the albedo of conifer forests in both winter and summer, 50–80% higher evapotranspiration, and therefore only 30–50% of the sensible heat flux of conifers in summer. Therefore, a warming‐induced increase in fire frequency that increased the proportion of deciduous forests in the landscape, would act as a negative feedback to regional warming. Changes in thermokarst and the aerial extent of wetlands, lakes, and ponds would alter high‐latitude methane flux. There is currently a wide discrepancy among estimates of the size and direction of CO 2 flux between high‐latitude ecosystems and the atmosphere. These discrepancies relate more strongly to the approach and assumptions for extrapolation than to inconsistencies in the underlying data. Inverse modelling from atmospheric CO 2 concentrations suggests that high latitudes are neutral or net sinks for atmospheric CO 2 , whereas field measurements suggest that high latitudes are neutral or a net CO 2 source. Both approaches rely on assumptions that are difficult to verify. The most parsimonious explanation of the available data is that drying in tundra and disturbance in boreal forest enhance CO 2 efflux. Nevertheless, many areas of both tundra and boreal forests remain net sinks due to regional variation in climate and local variation in topographically determined soil moisture. Improved understanding of the role of high‐latitude ecosystems in the climate system requires a concerted research effort that focuses on geographical variation in the processes controlling land–atmosphere exchange, species composition, and ecosystem structure. Future studies must be conducted over a long enough time‐period to detect and quantify ecosystem feedbacks.

FLUXNET is a global network of micrometeorological flux measurement sites that measure the exchanges of carbon dioxide, water vapor, and energy between the biosphere and atmosphere. At present over 140 sites are operating on a long-term and continuous basis. Vegetation under study includes temperate conifer and broadleaved (deciduous and evergreen) forests, tropical and boreal forests, crops, grasslands, chaparral, wetlands, and tundra. Sites exist on five continents and their latitudinal distribution ranges from 70°N to 30°S.\nFLUXNET has several primary functions. First, it provides infrastructure for compiling, archiving, and distributing carbon, water, and energy flux measurement, and meteorological, plant, and soil data to the science community. (Data and site information are available online at the FLUXNET Web site, http://www-eosdis.ornl.gov/FLUXNET/.) Second, the project supports calibration and flux intercomparison activities. This activity ensures that data from the regional networks are intercomparable. And third, FLUXNET supports the synthesis, discussion, and communication of ideas and data by supporting project scientists, workshops, and visiting scientists. The overarching goal is to provide information for validating computations of net primary productivity, evaporation, and energy absorption that are being generated by sensors mounted on the NASA Terra satellite.\nData being compiled by FLUXNET are being used to quantify and compare magnitudes and dynamics of annual ecosystem carbon and water balances, to quantify the response of stand-scale carbon dioxide and water vapor flux densities to controlling biotic and abiotic factors, and to validate a hierarchy of soil-plant-atmosphere trace gas exchange models. Findings so far include 1) net C02 exchange of temperate broadleaved forests increases by about 5.7 g C m~2 day-1 for each additional day that the growing season is extended; 2) the sensitivity of net ecosystem C02 exchange to sunlight doubles if the sky is cloudy rather than clear; 3) the spectrum of C02 flux density exhibits peaks at timescales of days, weeks, and years, and a spectral gap exists at the month timescale; 4) the optimal temperature of net C02 exchange varies with mean summer temperature; and 5) stand age affects carbon dioxide and water vapor flux densities.

Despite the diversity of the Earth's terrestrial ecosystems in structure and function, all obey similar biophysical and meteorological principles in their exchange of carbon dioxide, water, and energy with the overlying atmosphere. This conclusion was drawn from new data presented by Earth, atmospheric,and ecological scientists attending a recent workshop on the global flux network (FLUXNET) project. The FLUXNET project, funded by the National Aeronautics and Space Administration, consolidates existing regional networks of research sites around the world that measure fluxes of carbon dioxide, water vapor, and energy between terrestrial ecosystems and the atmosphere.These sites directly measure net ecosystem exchange (NEE) using a micro‐meteorological technique known as the eddy covariance method. The information collected is used to generate and validate algorithms that will be used by the Earth Observing System (EOS) satellites to compute net primary productivity at the global scale. The data collected through FLUXNET will also help explain how carbon, water, and nutrient cycles of terrestrial ecosystems respond to global environmental and climate change.

There are two great unexplained mysteries in our understanding of the universe. One is the nature of a unified generalized theory to explain both gravity and electromagnetism. The other is an understanding of the nature of turbulence. After I die, I expect God to clarify the general field theory to me. I have no such hope for turbulence.Theodore von Kármán (unpublished)

Abstract The application of the eddy covariance flux method to measure fluxes of trace gas and energy between ecosystems and the atmosphere has exploded over the past 25 years. This opinion paper provides a perspective on the contributions and future opportunities of the eddy covariance method. First, the paper discusses the pros and cons of this method relative to other methods used to measure the exchange of trace gases between ecosystems and the atmosphere. Second, it discusses how the use of eddy covariance method has grown and evolved. Today, more than 400 flux measurement sites are operating world‐wide and the duration of the time series exceed a decade at dozens of sites. Networks of tower sites now enable scientists to ask scientific questions related to climatic and ecological gradients, disturbance, changes in land use, and management. The paper ends with discussions on where the field of flux measurement is heading. Topics discussed include role of open access data sharing and data mining, in this new era of big data, and opportunities new sensors that measure a variety of trace gases, like volatile organic carbon compounds, methane and nitrous oxide, and aerosols, may yield.

Stable isotopes of atmospheric carbon dioxide (CO 2 ) contain a wealth of information regarding biosphere‐atmosphere interactions. The carbon isotope ratio of CO 2 (δ 13 C) reflects the terrestrial carbon cycle including processes of photosynthesis, respiration, and decomposition. The oxygen isotope ratio (δ 18 O) reflects terrestrial carbon and water coupling due to CO 2 ‐H 2 O oxygen exchange. Isotopic CO 2 measurements, in combination with ecosystem‐isotopic exchange models, allow for the quantification of patterns and mechanisms regulating terrestrial carbon and water cycles, as well as for hypothesis development, data interpretation, and forecasting. Isotopic measurements and models have evolved significantly over the past two decades, resulting in organizations that promote model‐measurement networks, e.g., the U.S. National Science Foundation's Biosphere‐Atmosphere Stable Isotope Network, the European Stable Isotopes in Biosphere‐Atmosphere Exchange Network, and the U.S. National Environmental Observatory Network.

The plant in a field of energy, or in any considered area in which gradients exist, reacts passively to its surroundings . . . it should be clear that the sun, or even outer space, is not more removed from the plant than the next millimeter of air; it is the specific part of heat exchange being considered that determines what should be included in the plant’s environment.Klaus Raschke (1960)

Forestry – including afforestation (the planting of trees on land where they have not recently existed), reforestation, avoided deforestation, and forest management – can lead to increased sequestration of atmospheric carbon dioxide and has therefore been proposed as a strategy to mitigate climate change. However, forestry also influences land‐surface properties, including albedo (the fraction of incident sunlight reflected back to space), surface roughness, and evapotranspiration, all of which affect the amount and forms of energy transfer to the atmosphere. In some circumstances, these biophysical feedbacks can result in local climate warming, thereby counteracting the effects of carbon sequestration on global mean temperature and reducing or eliminating the net value of climate‐change mitigation projects. Here, we review published and emerging research that suggests ways in which forestry projects can counteract the consequences associated with biophysical interactions, and highlight knowledge gaps in managing forests for climate protection. We also outline several ways in which biophysical effects can be incorporated into frameworks that use the maintenance of forests as a climate protection strategy.