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An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
We compared the two commercially available sequencing kits for HIV-1 drug resistance testing, the ViroSeq Genotyping System (Applied Biosystems, Foster City, CA, U.S.A.) and the TRUGENE HIV-1 Genotyping Kit (Visible Genetics, Inc., Toronto, Ontario, Canada), with our in-house genotyping system. Fifteen viral isolates from African patients (6 treated and 9 untreated) covering a panel of HIV-1 subtypes A through J and 7 plasma samples from Belgian and African patients (2 treated and 5 untreated) were tested. All the samples could be amplified and sequenced by the three systems; however, for all systems, alternative amplification/sequencing primers had to be used for some samples belonging to subtype B as well as to other subtypes. The consensus sequence was partially derived from only one strand for the in-house system and for the ViroSeq Genotyping System. The TRUGENE HIV-1 Genotyping Kit scored the highest number of ambiguities, followed by the ViroSeq Genotyping System and the in-house system. For 11 samples, these differences in reporting mixtures affected 14 resistance-related positions, which altered the interpretation toward protease inhibitors for 2 samples when using version 1.2 RetroGram software (Virology Networks, Utrecht, The Netherlands). All three systems were able to sequence diluted samples with a viral load down to 103 or 104 RNA copies/ml. Our data therefore suggest that the performance of amplification and sequencing primers must be improved to allow fast and reliable resistance testing for all HIV-1 subtypes.
SUMMARY The family Flaviviridae contains three genera: Hepacivirus, Flavivirus, and Pestivirus. Worldwide, more than 170 million people are chronically infected with Hepatitis C virus and are at risk of developing cirrhosis and/or liver cancer. In addition, infections with arthropod-borne flaviviruses (such as dengue fever, Japanese encephalitis, tick-borne encephalitis, St. Louis encephalitis, Murray Valley encephalitis, West Nile, and yellow fever viruses) are emerging throughout the world. The pestiviruses have a serious impact on livestock. Unfortunately, no specific antiviral therapy is available for the treatment or the prevention of infections with members of the Flaviviridae. Ongoing research has identified possible targets for inhibition, including binding of the virus to the cell, uptake of the virus into the cell, the internal ribosome entry site of hepaciviruses and pestiviruses, the capping mechanism of flaviviruses, the viral proteases, the viral RNA-dependent RNA polymerase, and the viral helicase. In light of recent developments, the prevalence of infections caused by these viruses, the disease spectrum, and the impact of infections, different strategies that could be pursued to specifically inhibit viral targets and animal models that are available to study the pathogenesis and antiviral strategies are reviewed.
SUMMARY The effects of the synthetic polyanionic interferon inducers maleic acid/divinyl ether copolymer (MA/DVE) and polyinosinic/polycytidylic acid (polyrI/polyrC) were studied in mice challenged intranasally with vesicular stomatitis virus. Young (14-day or 24-day) animals were used. Either local (intranasal) or systemic (intraperitoneal) treatment protected significantly against virus infection. Optimal local protection was given by 40 μg. of polyrI/polyrC instilled 4 hr before virus challenge. Intraperitoneal MA/DVE exerted a more durable effect lasting for at least 10 days, and polyrI/polyrC proved to be active when applied several days after inoculation of virus. PolyrI/polyrC treatment started after virus in the brain had reached maximum concentration retarded progression of the disease, but when delayed until clinical signs of illness occurred, polyrI/polyrC treatment was not effective. The protective activity of MA/DVE and polyrI/polyrC injected intraperitoneally against virus infection at a distant site suggested the mediation by a systemic antivirus state, presumably due to interferon production.
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No abstract is provided for this article.
No abstract is provided for this article.
Using Doppler-free two-photon spectroscopy, we have measured the isotopic shift 20Ne-22Ne for two-photon transitions between the 3s[3/2]2 metastable state and the excited states of the 2p5 4d and 2p5 5s configurations. The results are analyzed using the specific mass shift theory. We show that we can deduce from the expérimental data the expansion of the 1P Russel-Saunders term over the true eigenstates of the atom. We also obtain experimental determinations of the radial integrals J(4d, 2p) and J(5s, 2p). All the experimental results are in good agreement with theoretical predictions of Bauche and Liberman.