Publications

The assessment of man-made or natural origin of microscopic debris in the environment requires spectroscopical analysis. However, it is difficult to use commercial FT-IR and spontaneous Raman microspectrometers to analyze micro-fibers due to their small size and strong autofluorescence in some specimens. Using a custom stimulated Raman scattering (SRS) microscope, we assessed the origin of microfibers from different environments by comparing their SRS spectra to a home-built library. Our analysis shows that the majority of the analysed micro-fibers are of natural origin. We show that SRS microscopy overcomes the limitations of FT-IR and spontaneous Raman microscopy for classification of micro-fibers.

Over the past few decades, substantial funding has been directed towards improving scientific understanding and management of impacts of climate change in the marine environment. Following concerns that the key messages from these studies were not reaching the public, a comprehensive opinion poll of 10,000 European citizens in 10 countries was conducted to establish levels of awareness, concern, and trust among different demographic groups (by age, gender, proximity to the coast) and nationalities. Citizens exhibited varying levels of self-declared 'informedness' and concern. Citizens from Germany, Italy and Spain claimed to be the most informed on marine climate change issues; those from Czech Republic, Netherlands and Estonia claimed to be least informed. Respondents were least aware of ocean acidification and most aware of melting sea ice, pollution and overfishing. Citizens of Italy suggested that they were generally most concerned about marine climate change issues. Respondents from coastal areas claimed to be both more informed and more concerned than those living inland, as did females and older age groups (54-64 years). European citizens obtain information about climate change in the seas and ocean from different sources, particularly television and the internet. Trust in the various media sources varies among countries and demographic groups. Television is trusted most in Estonia, Germany and Ireland and least in France. The internet is trusted most in Italy, Czech Republic and Estonia, but least in France and the United Kingdom. 18-24 year olds are the biggest users of the internet, but trust this source less than older age groups. Academic scientists or those working for environmental NGOs are trusted more than scientists working for government or industry. Citizens from France are more trusting of industry than any other country polled. In terms of policy actions, most respondents highlighted mitigation measures as opposed to local-scale adaptation. Younger participants prioritised actions associated with reducing carbon emissions, whereas older age groups prioritised improving coastal defences. Successful adaptation to the impacts of climate change requires public engagement and support for policy decisions, and the use of different approaches to take account of differences among demographic groups and nationalities.

Giant clams (subfamily Tridacninae) are prevalent members of coral reef communities and engage in symbioses with algal photosymbionts of the family Symbiodiniaceae, similar to their scleractinian coral counterparts. However, we know little about their associated bacterial microbiome members. Here, we explored bacterial community diversity of digestive system, gill, and mantle tissues associated with the giant clam Tridacna maxima across a cross-shelf gradient (inshore, midshore, and offshore reef sites) in the central Red Sea using 16S rRNA gene amplicon sequencing. Different tissues harbor spatially stable and distinct microbial communities. Notably, diverse assemblages of bacteria affiliated to the family Endozoicomonadaceae were prevalent in all tissues, but particularly abundant in gills and to a lesser extent in digestive tissues. Besides Endozoicomonadaceae, bacteria in the families Pasteurellaceae, Alteromonadaceae, and Comamonadaceae were common associates, depending on the tissue queried. Taxonomy-based functional inference identified processes related to nitrogen cycling (among others) to be enriched in giant clam tissues and contributed by Endozoicomonadaceae. Our study highlights the tissue-specificity and broad taxonomic range of Endozoicomonadaceae associates, similar to other marine invertebrates, and suggests their contribution to nitrogen-related pathways. The investigation of bivalve-associated microbiome communities provides an important addition to the pathogen-focused studies for commercially important bivalves (e.g., oysters).

Amylin is part of the endocrine pancreatic system that contributes to glycemic control, regulating blood glucose levels. However, human amylin has a high tendency to aggregate, forming isolated amylin deposits that are observed in patients with type 2 diabetes mellitus. In search of new inhibitors of amylin aggregation, we undertook the chemical analyses of five marine macroorganisms encountered in high populations in the Red Sea and selected a panel of 10 metabolites belonging to different chemical classes to evaluate their ability to inhibit the formation of amyloid deposits in the human amylin peptide. The thioflavin T assay was used to examine the kinetics of amyloid aggregation, and atomic force microscopy was employed to conduct a thorough morphological examination of the formed fibrils. The potential ability of these compounds to interact with the backbone of peptides and compete with β-sheet formation was analyzed by quantum calculations, and the interactions with the amylin peptide were computationally examined using molecular docking. Despite their structural similarity, it could be observed that the hydrophobic and hydrogen bond interactions of pyrrolidinones 9 and 10 with the protein sheets result in one case in a stable aggregation, while in the other, they cause distortion from aggregation.

Anthropogenic litter density and composition data were obtained by conducting aerial surveys on 44 beaches along the Saudi Arabian Coast of the Red Sea [1]. The aerial surveys were completed with commercial drones of the DJI Phantom suite flown at a 10 m altitude. The stills have a resolution of less than 0.5 cm pixels−1, hence, litter objects of few centimetres like bottle caps are easily detectable in the drone images. We here provide a subsample of the drone images acquired. To spare the time needed to visually count the litter objects in the thousands of drone images acquired, these were automatically screened using an object detection algorithm, specifically a Faster R-CNN, able to perform a binary classification in litter and non-litter and to categorize the objects in classes. The multi-class classification, however, is a challenging problem and, hence, it was conducted only on the 15 beaches that showed the highest performance after the binary classification. The performance of the algorithm was calculated by visually screening a subsample of images and it was used to correct the output of the Faster R-CNN. The described steps allowed to obtain an estimate of the litter density in 44 beaches and the litter composition in 15 beaches. By multiplying the relative abundance of each litter class and the median weight of objects belonging to each class, we obtained an estimate of the total mass of plastic beached on 15 beaches. Possible predictors of litter density and mass are the population and marine traffic densities at the site, the exposure of the beach to the prevailing wind and the wind speed, the fetch length and the presence of vegetation where litter could get trapped. Making such raw data (i.e. litter density and composition and their predictors) available can help building the base for a robust global estimate of anthropogenic litter in coastal environments and it is particularly important if data regards an understudied region like the Arabian Peninsula. Moreover, we share a subsample of the original drone images to allow usage from stakeholders.

This note aims to report the first recapture of a nesting green turtle (Chelonia mydas) in the Al Wajh lagoon, originally observed, and tagged while nesting in August 2021; and subsequently found in August 2024 under similar conditions. The turtle was first labelled with a flipper tag and satellite-tagged as part of a long-term monitoring effort to assess the post-nesting migratory movements and habitat use of marine turtles in the Red Sea. The recapture in 2024 represents the first record of this nature within Al Wajh Lagoon, specifically at Breem1 Island. This note provides insights into the green turtle growth, site fidelity, and remigration interval. Such findings contribute to the understanding of green turtle behavior, inform general population assessments, and confirm the importance of long-term marine turtle conservation strategies in the region.

Responses of cnidarian-Symbiodiniaceae associations to warming are determined, in part, by high-frequency temperature variability. Yet, the role of such variability in determining specific maximum temperature thresholds of cnidarian holobionts (the ecological units comprised of cnidarian hosts and associated microorganisms, including Symbiodiniaceae) remains untested. Here we contrasted the thermal resilience (that is the ability to resist stress) of a model symbiotic cnidarian from the Red Sea (jellyfish of the genus Cassiopea) under stable and diel oscillating temperature conditions that provide night-time reprieves from daily maximum temperatures. Holobionts were subjected to two thermal trajectories; one that increased but plateaued at 2 °C below identified bleaching thresholds and another that increased incrementally until holobionts bleached. We used behavior, growth, photochemical efficiency, Symbiodiniaceae (symbiont) cell density, and total chlorophyll cell content to characterize thermal resilience and examined Symbiodiniaceae community composition responses at 1 and 13 days of exposure, and post-bleaching. Lower night-time temperatures, resulting in lower daily mean temperatures, allowed holobionts to withstand daily maximum temperatures close to their bleaching thresholds for two extra days than those under stable maximum temperature conditions. Lower night-time temperatures increased the bleaching threshold of the holobionts, whereby holobionts exposed to night-time thermal reprieves tolerated a more extreme daily mean temperature of 40.6 ºC and reached a daily thermal maxima 4 ºC higher than those under stable temperature conditions. However, post-bleaching observations indicate that night-time temperature reprieves did not prevent symbiont cell or pigment loss. Symbiodiniaceae communities were unaffected by lower night-time temperatures and no directional changes indicative of symbiont shuffling/ selection of thermally tolerant lineages were observed. We show that stable experimental treatments may fail to accurately identify maximum thermal thresholds of non-calcifying cnidarians and limit their relevance to in situ environments that are often characterized by high levels of temperature fluctuations.