Publications

You have probably heard that plastic pollution is becoming a big problem for the environment, and especially for the oceans. When a piece of plastic reaches the sea, the seawater and sunlight make it slowly fall apart into tiny plastic particles. These small particles are called microplastics and are even smaller than a ladybug—and sometimes not even visible. Scientists have found that many marine animals mistake these microplastics for food and eat them! But what about the animals in coral reefs? Many animals in reefs, including corals and giant clams, are fixed to the bottom of the sea and cannot move. So, they cannot escape from the microplastics that are literally “raining down” on them. Recently, we discovered that many of these coral reef animals are not only eating the microplastics, but the plastics can also stick on their bodies like flies on flypaper!

Abstract. Vegetated coastal ecosystems, including tidal marshes, mangroves and seagrass meadows, are being increasingly assessed in terms of their potential for carbon dioxide sequestration worldwide. However, there is a paucity of studies that have effectively estimated the accumulation rates of sediment organic carbon (Corg), also termed blue carbon, beyond the mere quantification of Corg stocks. Here, we discuss the use of the 210Pb dating technique to determine the rate of Corg accumulation in these habitats. We review the most widely used 210Pb dating models to assess their limitations in these ecosystems, often composed of heterogeneous sediments with varying inputs of organic material, that are disturbed by natural and anthropogenic processes resulting in sediment mixing and changes in sedimentation rates or erosion. Through a range of simulations, we consider the most relevant processes that impact the 210Pb records in vegetated coastal ecosystems and evaluate how anomalies in 210Pb specific activity profiles affect sediment and Corg accumulation rates. Our results show that the discrepancy in sediment and derived Corg accumulation rates between anomalous and ideal 210Pb profiles is within 20 % if the process causing such anomalies is well understood. While these discrepancies might be acceptable for the determination of mean sediment and Corg accumulation rates over the last century, they may not always provide a reliable geochronology or historical reconstruction. Reliable estimates of Corg accumulation rates might be difficult at sites with slow sedimentation, intense mixing and/or that are affected by multiple sedimentary processes. Additional tracers or geochemical, ecological or historical data need to be used to validate the 210Pb-derived results. The framework provided in this study can be instrumental in reducing the uncertainties associated with estimates of Corg accumulation rates in vegetated coastal sediments.

Clonal reproduction characterizes a wide range of species including clonal plants in terrestrial and aquatic ecosystems, and clonal microbes such as bacteria and parasitic protozoa, with a key role in human health and ecosystem processes. Clonal organisms present a particular challenge in population genetics because, in addition to the possible existence of replicates of the same genotype in a given sample, some of the hypotheses and concepts underlying classical population genetics models are irreconcilable with clonality. The genetic structure and diversity of clonal populations were examined using a combination of new tools to analyse microsatellite data in the marine angiosperm Posidonia oceanica . These tools were based on examination of the frequency distribution of the genetic distance among ramets, termed the spectrum of genetic diversity (GDS), and of networks built on the basis of pairwise genetic distances among genets. Clonal growth and outcrossing are apparently dominant processes, whereas selfing and somatic mutations appear to be marginal, and the contribution of immigration seems to play a small role in adding genetic diversity to populations. The properties and topology of networks based on genetic distances showed a ‘small-world’ topology, characterized by a high degree of connectivity among nodes, and a substantial amount of substructure, revealing organization in subfamilies of closely related individuals. The combination of GDS and network tools proposed here helped in dissecting the influence of various evolutionary processes in shaping the intra-population genetic structure of the clonal organism investigated; these therefore represent promising analytical tools in population genetics.

S1. List of modelled species and individual number of records.S2. Predictive performance per modelled species.S3. Contribution of environmental predictors and apparent physiological thresholds per species.S4. Collinearity analyses between environmental predictors.S5. Predicted species richness per family and suitable habitat areas for fucoid and kelp per realm as defined by Spalding et al., (2007).S6. List of predicted species of kelp per ecoregion as defined by Spalding et al., (2007).S7. List of predicted species of fucoids per ecoregion as defined by Spalding et al., (2007).S8. Predictive layers per species and stacked as global estimates of potential species richness

Clonal organisms present a particular challenge in population genetics because, in addition to the possible existence of replicates of the same genotype in a given sample, some of the hypotheses and concepts underlying classical population genetics models are irreconcilable with clonality. The genetic structure and diversity of clonal populations was examined using a combination of new tools to analyze microsatellite data in the marine angiosperm Posidonia oceanica. These tools were based on examination of the frequency distribution of the genetic distance among ramets, termed the spectrum of genetic diversity (GDS), and of networks built on the basis of pairwise genetic distances among genets. The properties and topology of networks based on genetic distances showed a topology, characterized by a high degree of connectivity among nodes, and a substantial amount of substructure, revealing organization in sub-families of closely related individuals. Keywords: genetic networks; small-world networks; genetic diversity; clonal organisms

Policies aiming to preserve vegetated coastal ecosystems (VCE; tidal marshes, mangroves and seagrasses) to mitigate greenhouse gas emissions require national assessments of blue carbon resources. Here, we present organic carbon (C) storage in VCE across Australian climate regions and estimate potential annual CO 2 emission benefits of VCE conservation and restoration. Australia contributes 5–11% of the C stored in VCE globally (70–185 Tg C in aboveground biomass, and 1,055–1,540 Tg C in the upper 1 m of soils). Potential CO 2 emissions from current VCE losses are estimated at 2.1–3.1 Tg CO 2 -e yr -1 , increasing annual CO 2 emissions from land use change in Australia by 12–21%. This assessment, the most comprehensive for any nation to-date, demonstrates the potential of conservation and restoration of VCE to underpin national policy development for reducing greenhouse gas emissions.

Fish farms represent a growing source of disturbance to shallow benthic ecosystems like seagrass meadows. Despite some existing insights on the mechanisms underlying decline, efficient tools to quantitatively predict the response of benthic communities to fish farm effluents have not yet been developed. We explored relationships of fish farm organic and nutrient input rates to the sediments with population dynamics of the key seagrass species (Posidonia oceanica) in deep meadows growing around four Mediterranean Sea bream and Sea bass fish farms. We performed 2 annual shoot censuses on permanent plots at increasing distance from cages. Before each census we measured sedimentation rates adjacent to the plots using benthic sediment traps. High shoot mortality rates were recorded near the cages, up to 20 times greater than at control sites. Recruitment rates remained similar to undisturbed meadows and could not compensate mortality, leading to rapid seagrass decline within the first 100 meters from cages. Seagrass mortality increased with total (R2= 0.47, p< 0.0002), organic matter (R2= 0.36, p= 0.001), nitrogen (R2= 0.34, p= 0.002) and phosphorus (R2= 0.58, p< 3 x 10-5) sedimentation rates. P. oceanica decline accelerated above a phosphorus loading threshold of 50 mg m-2 day-1. Benthic sedimentation rates seem a powerful predictor of seagrass mortality from fish farming, integrating local hydrodynamics, waste effluents variability and several environmental mechanisms, fuelled by organic inputs and leading to seagrass loss. Coupling direct measurements of benthic sedimentation rates with dynamics of key species is proposed as an efficient way to predict and minimize fish farm impacts to benthic communities.

Growing evidence of inorganic nutrient limitation on oceanic bacteria suggests a global dependence of bacterial activity and production on rates of nutrient supply.The present study examined whether surface bacterial abundance is significantly related to water column stability, and whether bacterial activity and growth rate are related to the rate of diffusive supply of inorganic nutrients to the mixed layer in the Central Atlantic during 2 meridional cruises.The 2 cruises were run under very different oceanic conditions, with relatively low values of bacterial activity in spring 1995 and relatively higher values in fall 1995.We obtained depth-resolved data in the second cruise and found that the integrated value of bacterial production was also related to the rate of nutrient supply, while integrated particulate primary production and chlorophyll concentration were not.There was also no relationship between particulate primary production and bacterial production.The relationship between nutrient supply and integrated bacterial production was tested with data from a mesocosm experiment showing a good fit to the pattern obtained in the Atlantic.Average bacterial production was ~21% of primary production in the Central Atlantic, with values ranging between 5 and 100%, and higher values in the tropical areas.The demonstration of a direct relationship between nutrient supply and bacterial activity helps to explain a relatively large bacterial biomass as compared to phytoplankton biomass, a low bacterial growth efficiency, and a high bacterial carbon demand relative to contemporaneous primary production often measured in the open ocean, as well as the accumulation of dissolved organic carbon (DOC) observed in nutrient-limited oligotrophic seas.

Significance High concentrations of floating plastic debris have been reported in remote areas of the ocean, increasing concern about the accumulation of plastic litter on the ocean surface. Since the introduction of plastic materials in the 1950s, the global production of plastic has increased rapidly and will continue in the coming decades. However, the abundance and the distribution of plastic debris in the open ocean are still unknown, despite evidence of affects on organisms ranging from small invertebrates to whales. In this work, we synthetize data collected across the world to provide a global map and a first-order approximation of the magnitude of the plastic pollution in surface waters of the open ocean.