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The response of stable and labile C pools to global warming is uncertain, especially in paddy soils with very low oxygen availability and the dominance of electron acceptors with low efficiency. To clarify the response of organic matter decomposition to warming, flooded paddy soil was incubated at four temperatures (5, 15, 25, and 35 °C) for 75 days. The 13C-labelled Na-acetate was used as an analogue for root exudates and as a methane (CH4) source. Soil with acetate had higher C availability to microorganisms leading to 2–2.7 times and 2–153 times higher emission of carbon dioxide (CO2) and CH4 on day 75 than from soil without acetate, respectively. Incubation temperature explained >40% of the variance of CO2 and CH4 effluxes. Acetate stimulated microbial activities and turnover and so, increased soil organic matter (SOM) mineralisation in the first week, especially at low temperatures (<15 °C) with slow acetate consumption and longer oxygen (O2) availability. The priming effects measured as CH4 emissions were especially sensitive to temperatures from 5 to 15 °C. The high Q 10 value of primed CH4 (Q 10 > 10) at low temperature indicates that flooded paddy fields will contribute greatly to the greenhouse effect in warm winters, which have become common from 1970s. Caution is necessary for interpretations of previous estimates of the temperature sensitivity of SOM decomposition because the priming effect was ignored, especially that of CH4 under the condition of limited O2 availability in paddy and other wetland soils.
. Microorganisms regulate the carbon (C) cycle in soil, controlling the utilization and recycling of organic substances. To reveal the contribution of particular microbial groups to C utilization and C turnover within the microbial cells, fate of 13C-labeled glucose was studied under field conditions. The 13C was traced in cytosolic substances, amino sugars and phospholipid fatty acids (PLFA) at intervals of 3, 10 and 50 days after glucose addition. 13C enrichment into PLFA (~1.5 % of PLFA C at day 3) was one order of magnitude greater than into the cytosol, showing the importance of cell membranes for initial C utilization. 13C enrichment of amino sugars in living microorganisms at day 3 accounted for 0.57 %, resulting that the turnover of cell wall components is two times slower than that of cell membranes. Turnover time of C in the cytosol (150 days) was three times longer than in PLFAs (47 days). Consequently, despite the lability of cytosol pool and expected fast turnover rates, intensive recycling of cytosol components, within the living cells, leads to a longer turnover time. Amino sugars originate mainly from microbial residues, thus longer experimental periods are required for estimation of their turnover times. Both PLFA and amino sugar profiles indicated that glucose C was preferentially used by bacteria. The 13C incorporated into bacterial cell membrane components decreased with time, but it remained constant or even increased for filamentous microorganisms. Hence, over a short period, bacteria contribute more to the utilization of low molecular weight organic substances, whereas filamentous microorganisms are responsible for further C transformations. Thus, tracing 13C in cellular compounds with contrasting turnover rates elucidated the role of microbial groups and their cellular compartments in C utilization and recycling in soil. This information is especially important for assessing C fluxes in soil and the contribution of C from microbial residues to soil organic matter.
Separate determination of root respiration and rhizomicrobial respiration is one of the most interesting, important, and methodologically complicated probl
SOMPACS is a project recommended by EJP SOIL for funding under the 1st External Call "Towards Healthy, Resilient and Sustainable Agricultural Soils". The goal of this project is to assess management practices that enrich organic matter pools that are resilient to rapid microbial decomposition. The project started in 2022 as a consortium of 12 research institutions from Poland, Germany, Ireland, Lithuania, UK, Italy and USA for a period of three years. Soil and vegetation samples from eight long-term experiments that differ in soil management practices (i.e., conventional vs. no-tillage; mineral vs. organic fertilization; with and without catch crop; and arable land vs. undisturbed grassland) are investigated. Study sites include: 22- and 54-year long experiments in Lithuania; 26-year long experiment in Italy; 30- and 40-year long experiments in Ireland; 30- and 46- and 100-year long experiments in Poland; and 178-year long Broadbalk experiment in Great Britain. Additional experimentation includes assessing the impact of root growth promoting amendments (commercially available humic substances, biochar and biogas digestate) on stable organic matter pools. In parallel with soil sampling, plant productivity are measured in all field experiments. This investigation is couples fields studies with small-scale experimental plots and laboratory incubations under controlled conditions. In addition to assessing basic soil properties, the following state-of-the-art analyses are conducted: SOM composition and stability by Py-GC-MS; fractionation of aggregate size classes and C pools of increasing physicochemical protection; isotopic analysis of δ13C and δ15N performed on different SOM pools; microbiological properties (community-level physiological profiling, selected functional genes involved in C and N cycles, microbiome and mycobiome analyses by next-generation sequencing, genetic diversity using terminal restriction fragment length polymorphism); enzymatic activity; soil water retention and soil water repellency; mineral composition of clay fraction; (8) soil structure stability. SOM composition and stability by Py-GC-MS; fractionation of aggregate size classes and C pools of increasing physicochemical protection; isotopic analysis of δ13C and δ15N performed on different SOM pools; microbiological properties (community-level physiological profiling, selected functional genes involved in C and N cycles, microbiome and mycobiome analyses by next-generation sequencing, genetic diversity using terminal restriction fragment length polymorphism); enzymatic activity; soil water retention and soil water repellency; mineral composition of clay fraction; (8) soil structure stability. The most resistant SOM pool (humin) are isolated by different methods (isolation vs. extraction) and examined for chemical composition and structure, using spectrometric and spectroscopic techniques (mass spectrometry, NMR, FTIR, EPR, UV-Vis-NIR, fluorescence). The carbon stocks in the soil profile will be evaluated and the carbon extractable in cold water will be determined to assess the potential carbon leaching and microbial availability. Additionally, in-field soil carbon dioxide (CO 2 ) fluxes from selected experiments is monitored. Thus far, soil samples (0-100 cm depth) were collected and the humin fraction from surface A horizon was isolated for spectroscopic studies. Crop yield and vegetation productivity was also assessed. The research was financed by NCBR (EJPSOIL/I/78/SOMPACS/2022).
The rhizosphere is an important hotspot of soil microbial activity, diversity, and functions. Despite being a microbial hotspot, studies have seldom addressed the differences in the response of the microbial community in bulk and rhizosphere soils to domestic animal disturbance. Here, we investigated grassland disturbance by physical uprooting behaviours of Tibetan pigs ( Sus scrofa domesticus ) on bacterial taxonomy and functions in three soil types: Histosols, Fluvisols, and Gleysols which are dominant on the Qinghai‐Tibet Plateau. We found that after 8 years of continued disturbance, compared to the undisturbed sites, disturbance consistently reduced rhizosphere bacterial α diversity (by 34.6% on average), restructured taxonomic communities, and weakened their carbon substrate utilization capacities in all soil types. The relative abundance of the phyla Proteobacteria, Actinobacteria, and Bacteriodetes increased, but the relative abundance of Acidobacteria, Chloroflexi, and Nitrospirae decreased in the rhizosphere under disturbance. In contrast, most detected taxonomic changes in bulk soils were minor, and their changing directions were divergent among studied soil types. Compared to the undisturbed, carbon utilization potential by rhizosphere microbes decreased under disturbance and the decrease extent was stronger (by 30.4% on average) than that in bulk soil. The strengthened environmental filtering, imposed by the significant reduction of soil water‐holding capacity and nutrient contents as well as the physical destruction of soil aggregates after disturbance, provided mechanistic insight into the extensive microbial restructuring within the rhizosphere. These results may have implications for recognizing changed root‐microbe interactions and ecological processes in disturbed soils for better understanding soil ecology under intensified herding activities.
No abstract is provided for this article.
Anthropogenic activities have raised nitrogen (N) input worldwide with profound implications for soil carbon (C) cycling in ecosystems. The specific impacts of N input on soil organic matter (SOM) pools differing in microbial availability remain debatable. For the first time, we used a much‐improved approach by effectively combining the 13 C natural abundance in SOM with 21 years of C 3 –C 4 vegetation conversion and long‐term incubation. This allows to distinguish the impact of N input on SOM pools with various turnover times. We found that N input reduced the mineralization of all SOM pools, with labile pools having greater sensitivity to N than stable ones. The suppression in SOM mineralization was notably higher in the very labile pool (18%–52%) than the labile and stable (11%–47%) and the very stable pool (3%–21%) compared to that in the unfertilized control soil. The very labile C pool made a strong contribution (up to 60%) to total CO 2 release and also contributed to 74%–96% of suppressed CO 2 with N input. This suppression of SOM mineralization by N was initially attributed to the decreased microbial biomass and soil functions. Over the long‐term, the shift in bacterial community toward Proteobacteria and reduction in functional genes for labile C degradation were the primary drivers. In conclusion, the higher the availability of the SOM pools, the stronger the suppression of their mineralization by N input. Labile SOM pools are highly sensitive to N availability and may hold a greater potential for C sequestration under N input at global scale.
Field measurements of net ecosystem CO2 exchange (NEE) with high temporal resolution are essential to construct a meaningful ecosystem C balance. The objec
Organic C and nutrients additions in soil can accelerate mineralisation of soil organic matter i.e. priming effects. However, only very few studies have been conducted to investigate the priming effects phenomenon in tropical Andosols. Nutrients (N, P, N+P) and 14C labelled glucose were added to Andosols from six natural and intensively used ecosystems at Mt. Kilimanjaro i.e. (1) savannah, (2) maize fields, (3) lower montane forest, (4) coffee plantation, (5) grasslands and (6) Chagga homegardens. Carbon-dioxide emissions were monitored over a 60 days incubation period. Mineralisation of glucose to 14CO2 was highest in coffee plantation and lowest in Chagga homegarden soils. Maximal and minimal mineralisation rates immediately after glucose additions were observed in lower montane forest with N+P fertilisation (9.1% ± 0.83 d -1) and in savannah with N fertilisation (0.9% ± 0.17 d -1), respectively. Glucose and nutrient additions accelerated native soil organic matter mineralisation i.e. positive priming. Chagga homegarden soils had the lowest 14CO2 emissions and incorporated the highest percent of glucose into microbial biomass. 50-60% of the 14C input was retained in soil. We attribute this mainly to the high surface area of non-crystalline constituents i.e. allophanes, present in Andosols and having very high sorption capacity for organic C. The allophanic nature of Andosols of Mt. Kilimanjaro especially under traditional Chagga homegarden agroforestry system shows great potential for providing essential environmental services, notably C sequestration.