Publications

Wheat quality, nutrient uptake and nutrient use efficiency are significantly influenced by nutrient sources and application rate. To investigate the integrative effect of biochar, farmyard manure (FYM) and nitrogen (organic and inorganic soil amendments) in a wheat-maize cropping system, a two year study was designed to assess the interactive outcome of biochar, FYM and nitrogenous fertilizer on wheat nitrogen (N) parameters and associated soil quality parameters. Three levels of biochar (0, 25 and 50 t ha -1 ), two levels of FYM (5 and 10 t ha -1 ) and two levels of nitrogen fertilizer (60 and 120 kg ha -1 ) were used in the study. Biochar application displayed a significantly increased in wheat leaf, stem, straw and grain N content; grain and total N-uptake and grain protein content by 24, 20, 24, 56, 50, 17 and 20% respectively. Similarly, biochar application significantly increased soil total N (TN) and soil mineral N (SMN) by 63 and 40% respectively in second year. FYM application increased grain, leaf and straw N content by 20, 19.5 and 18% respectively, and increased total N-uptake and grain protein content by 49 and 19% respectively. FYM increased soil TN and SMN by 63 and 32% in both the years of the experiment. Mineral N application increased soil TN by over a half and SMN by a third, and grain protein content increased 16%. In contrast, nitrogen use efficiency (NUE) decreased for all amendments relative to the control. However, biochar treated plots improved NUE by 38% compared to plots without biochar. In conclusion, this field experiment has illustrated the potential of biochar to bring about short-term benefits in wheat and soil quality parameters in wheat-maize cropping systems. However, the long-term benefits remain to be quantified.

Nitrogen (N) and sulphur (S) are essential nutrients for plant growth. A pot experiment was conducted to verify whether maize and soybean under monoculture and intercropping could utilise N- and S-containing amino acids when competing with soil microorganisms. Maize and soybean were able to utilise methionine (Met; 1.9–2.2% of total addition) and cysteine (Cys; 0.6–1.6% of total addition) as N and S sources, however they faced competition with soil microorganisms. Six hours after microbial uptake, 45.3–64.0% of the S from Met was retained in the microbial biomass, while there was much lower retention from Cys (16.8–34.5%), and 32.5–44.1% of the S from Cys and 15.6–33.3% of that from Met was transformed to SO4 2−. Cys was a superior S source for plants compared to Met, as higher SO4 2− release from Cys could support plant growth. Both maize and soybean plants took up NH4 + (98–99% of total N uptake) and SO4 2− (85–90%) as their main N and S sources from soil. The N from Cys and Met accounted for only ~1% of total N uptake from soil, and organic Cys and Met accounted for only ~0.2% of the total N uptake, indicating that these two amino acids have limited effects on plant N nutrition, due to the high inorganic N content in agricultural soil. However, the Cys and Met contribution (i.e., organic S uptake and mineral S uptake originating from Cys and Met) to total S uptake (10–15%) was an order of magnitude higher than their N contributions, suggesting that Cys and Met play an important role in soil S nutrition. Intercropping altered the uptake but not the preference for N and S forms in maize and soybean. Overall, the results suggest that S-containing amino acids are important S sources for plant growth even at a lower concentration in soil, but that they play a limited role in plant N nutrition due to a larger inorganic N pool in agricultural soil.

While many studies have examined the role of biochar in carbon (C) accrual in short-term scale, few have explored the decadal scale influences of biochar on non-biochar C, e.g., native soil organic C (SOC) and added substrate. To address this knowledge gap, soils were collected from decade-old biochar field trials located in the United Kingdom (Cambisol) and China (Fluvisol), with each site having had three application rates (25–30, 50–60 and 75–100 Mg ha −1 ) of biochar plus an unamended Control, applied once in 2009. We assessed physicochemical and microbial properties associated with sucrose (representing the rhizodeposits) mineralization and the priming effect (PE) on native SOC. Here, we showed both soils amended with biochar at the middle application rate (50 Mg ha −1 biochar in Cambisol and 60 Mg ha −1 biochar in Fluvisol) resulted in greater substrate mineralization. The enhanced accessibility and availability of sucrose to microorganisms, particularly fast-growing bacterial genera like Arenimonas , Spingomonas, and Paenibacillus (r-strategists belonging to the Proteobacteria and Firmicutes phyla, respectively), can be attributed to the improved physicochemical properties of the soil, including pH, porosity, and pore connectivity, as revealed by synchrotron-based micro-CT. Random forest analysis also confirmed the contribution of the microbial diversity and physical properties such as porosity on sucrose mineralization. Biochar at the middle application rate, however, resulted in the lowest PE (0.3 and 0.4 mg of CO 2 -C g soil −1 in Cambisol and Fluvisol, respectively) after 53 days of incubation. This result might be associated with the fact that the biochar promoted large aggregates formation, which enclosed native SOC in soil macro-aggregates (2–0.25 mm). Our study revealed a diverging pattern between substrate mineralization and SOC priming linked to the biochar application rate. This suggests distinct mechanisms, biophysical and physicochemical, driving the mineralization of non-biochar carbon in a field where biochar was applied a decade before.

Quantifying viruses in wastewater via RT-qPCR provides total genomic data but does not indicate the virus capsid integrity or the potential risk for human infection. Assessing virus capsid integrity in sewage is important for wastewater-based surveillance, since discharged effluent may pose a public health hazard. While integrity assays using cell cultures can provide this information, they require specialised laboratories and expertise. One solution to overcome this limitation is the use of photo-reactive monoazide dyes (e.g., propidium monoazide [PMAxx]) in a capsid integrity-RT-qPCR assay (ci-RT-qPCR). In this study, we tested the efficiency of PMAxx dye at 50 μM and 100 μM concentrations on live and heat-inactivated model viruses commonly detected in wastewater, including adenovirus (AdV), hepatitis A (HAV), influenza A virus (IAV), and norovirus GI (NoV GI). The 100 μM PMAxx dye concentration effectively differentiated live from heat-inactivated viruses for all targets in buffer solution. This method was then applied to wastewater samples (n = 19) for the detection of encapsulated AdV, enterovirus (EV), HAV, IAV, influenza B virus (IBV), NoV GI, NoV GII, and SARS-CoV-2. Samples were negative for AdV, HAV, IAV, and IBV but positive for EV, NoV GI, NoV GII, and SARS-CoV-2. In the PMAxx-treated samples, EV, NoV GI, and NoV GII showed −0.52–1.15, 0.9–1.51, and 0.31–1.69 log reductions in capsid integrity, indicating a high degree of potentially infectious virus in wastewater. In contrast, SARS-CoV-2 was only detected using RT-qPCR but not after PMAxx treatment, indicating the absence of encapsulated and potentially infectious virus. In conclusion, this study demonstrates the utility of PMAxx dyes to evaluate capsid integrity across a diverse range of viruses commonly monitored in wastewater.

Most soil surveys are based on soil geomorphic, physical and chemical properties, while many classifications are based on morphological properties in soil profile. Typically, microbial properties of the soil (e.g. biomass and functional diversity) or soil biological quality indicators (SBQIs) are not directly considered in soil taxonomic keys, yet soil classification schemes are often used to infer soil biological function relating to policy (e.g. soil pollution attenuation, climate change mitigation). To critically address this, our aim was to assess whether rates of carbon turnover in a diverse range of UK soils (n > 500) could effectively be described and sub-divided according to broadly defined soil groups by conventional soil classification schemes. Carbon turnover in each soil over a 90 d period was assessed by monitoring the mineralisation of either a labile (14C-labelled artificial root exudates) or more recalcitrant C source (14C-labelled plant leaves) in soil held at field capacity at 10 °C. A double exponential first order kinetic model was then fitted to the mineralisation profile for each individual substrate and soil. ANOVA of the modelled rate constants and pool sizes revealed significant differences between soil groups; however, these differences were small regardless of substrate type. Principle component and cluster analysis further separated some soil groups; however, the definition of the class limits remained ambiguous. Exclusive reference values for each soil group could not be established since the model parameter ranges greatly overlapped. We conclude that conventional soil classification provides a poor predictor of C residence time in soil, at least over short time periods. We ascribe this lack of observed difference to the high degree of microbial functional redundancy in soil, the strong influence of environmental factors and the uncertainties inherent in the use of short term biological assays to represent pedogenic processes which have taken ca. 10,000 y to become manifest.

Background Plastics pollution and antimicrobial resistance (AMR) are two major environmental threats, but potential connections between plastic associated biofilms, the ‘plastisphere’, and dissemination of AMR genes are not well explored. Results We conducted mesocosm experiments tracking microbial community changes on plastic surfaces transitioning from wastewater effluent to marine environments over 16 weeks. Commonly used plastics, polypropylene (PP), high density polyethylene (HDPE), low density polyethylene (LDPE) and polyethylene terephthalate (PET) incubated in wastewater effluent, river water, estuarine water, and in the seawater for 16 weeks, were analysed via 16S rRNA gene amplicon and shotgun metagenome sequencing. Within one week, plastic-colonizing communities shifted from wastewater effluent-associated microorganisms to marine taxa, some members of which (e.g. Oleibacter-Thalassolituus and Sphingomonas spp., on PET, Alcanivoracaceae on PET and PP, or Oleiphilaceae, on all polymers), were selectively enriched from levels undetectable in the starting communities. Remarkably, microbial biofilms were also susceptible to parasitism, with Saprospiraceae feeding on biofilms at late colonisation stages (from week 6 onwards), while Bdellovibrionaceae were prominently present on HDPE from week 2 and LDPE from day 1. Relative AMR gene abundance declined over time, and plastics did not become enriched for key AMR genes after wastewater exposure. Conclusion Although some resistance genes occurred during the mesocosm transition on plastic substrata, those originated from the seawater organisms. Overall, plastic surfaces incubated in wastewater did not act as hotspots for AMR proliferation in simulated marine environments.

No abstract is provided for this article.

Recultivation aims to compensate for negative ‘legacy’ effects on soils from past open-cast mining when restoring land to productive agricultural systems. But little is known about the belowground sulphur (S) cycle that develops along a soil chronosequence after recultivation, especially for the deeper part of the soil. We, therefore, investigated the spatio-temporal characteristics of organic S depletion by adding the 35S-labelled methionine to the surface (0-30 cm) and subsurface soil (30-60 cm and 60-90 cm) after recultivated for 1, 8, 14, 24 and 48 years, respectively. Overall, total organic carbon (TOC), nitrogen (TN) and sulphur (TS) in surface soil significantly increased after 48 years of recultivation. However, no significant changes in nutrient content were observed in subsurface soils along the soil chronosequence. Recultivation age had no large effect on the microbial uptake amount of organic S (35S-MB) in surface soil. However, recultivation ages (≥ 8 years) led to fast immobilisation of 35S and less 35S being released as sulphate throughout the profile to maintain microbial stoichiometric equilibrium in older soils. Specifically, in year 1 more than 30% of the 35S was metabolised as sulphate throughout the profile, it declined to 9% (0-30 cm in year 8), 4% (30-60 cm in year 14) and 13% (60-90 cm in year 14), respectively. Weak correlation relationships (Pearson analysis) between sulphate and soil TOC, TN and TS in subsurface soil indicated that the microbial metabolisms of organic S as sulphate in subsoil were regulated by more complex factors rather than solely soil nutrient availability. Significant changes in the organic S partition were observed at age 8 after the soil was recultivated with N-fixing alfalfa. Whereas, after that (≥ 14 years), soil organic S partition showed no significant changes when a conventional tillage and cropping system had been well established. In conclusion, the adapted recultivation management preserves soil S stock through the reduction in microbial metabolisms of organic S as sulphate rather than by increasing microbial S uptake.

No abstract is provided for this article.

Background and Aims Climate change is happening and causing severe impact on the sustainability of agroecosystems. We argue that many of the abiotic stresses associated with climate change will be most acutely perceived by the plant at the root-soil interface and are likely to be mitigated at this globally important interface. In this review we will focus on the direct impacts of climate change, temperature, drought and pCO 2 , on roots and rhizospheres. Methods and Results We consider which belowground traits will be impacted and discuss the potential for monitoring and quantifying these traits for modelling and breeding programs. We discuss the specific impacts of combined stress and the role of the microbial communities populating the root-soil interface, collectively referred to as the rhizosphere microbiota, in interactions with roots under stress and discuss the plastic responses to stress as a way of adapting plants to climate change. We then go on to discuss the role that modelling has in understanding this complex problem and suggest the best belowground targets for adaptation and mitigation to climate change. We finish by considering where the main uncertainties lie, providing perspective on where research is needed. Conclusion This review therefore focuses on the potential of roots and rhizosphere to adapt to climate change effects and to mitigate their negative impacts on plant growth, crop productivity, soil health and ecosystem services.