Additional file 1 of Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities — Felipe H. Coutinho | RDL Network
Additional file 1 of Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
Dataset en
Authors
FC
Felipe H. Coutinho
CS
Cynthia B. Silveira
MS
Marta Sebastián
Abstract
1 min read
Additional file 1: Table S1. Metadata of the collected samples and metagenomes. Table S2. Sequence data of the obtained viral genomes and genome fragments. Table S3. Functional and taxonomic annotation of the CDS encoded in the viral genomes and genome fragments. Table S4. Relative abundances of viral viral genomes and genome fragments across 58 metagenomes calculated as RPKM. Table S5. Relative abundances of viral KEGG KOs across 58 metagenomes calculated based on RPKM of individual viral viral genomes and genome fragments. Table S6. Relative abundances of viral KEGG pathways across 58 metagenomes calculated based on RPKM of individualviral genomes and genome fragments. Table S7. Relative abundances of viral KEGG metabolism across 58 metagenomes calculated based on RPKM of individual viral genomes and genome fragments. Table S8. Relative abundances of viruses grouped according to family level taxonomic affiliation based on RPKM of individual viral genomes and genome fragments. Table S9. Relative abundances of viruses grouped according to predicted host phylum (or class for Proteobacteria) taxonomic affiliation based on RPKM of individual viral scaffolds. Table S10. Results of Mann-Whitney tests used to compare the relative abundances of: viruses grouped according to predicted host phylum (or class for Proteobacteria), family level taxonomic affiliation, viral KEGG pathways, and viral KEGG metabolisms. Table S11. Results of Pearson and Spearman correlation analyses used to quantify the degrees of association between environmental parameters and the relative abundances of: viruses grouped according to predicted host phylum (or class for Proteobacteria), family level taxonomic affiliation, viral KEGG pathways, and viral KEGG metabolisms.
Chiara Vanni, Matthew S. Schechter, Silvia G. Acinas, Albert Barberán, Pier Luigi Buttigieg, Emilio O. Casamayor, Tom O. Delmont, Carlos M. Duarte, A. Murat Eren, ROBERT FINN, Renzo Kottmann, Alex Mitchell, Pablo Sánchez, Kimmo Sirén, Martin Steinegger, Frank Oliver Gloeckner, Antonio Fernàndez-Guerra
Discussion(0)
No comments yet. Be the first to comment.