Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware
In: Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware (Lecture notes in computer science)
Chapter In A Book 2006 English
Authors
TO
T. Oliver
BS
Bertil Schmidt
YJ
Y. Jakop
Abstract
1 min read
Profile Hidden Markov Models (PHMMs) are used as a popular tool in bioinformatics for probabilistic sequence database searching. The search operation consists of computing the Viterbi score for each sequence in the database with respect to a given query PHMM. Because...
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