Publications

The bloom of pelagic Sargassum in the Atlantic Ocean has become increasingly problematic, especially when the algae have beached. A build-up of decaying beached material has damaging effects on coastal ecosystems and tourism industries. While remote sensing offers an effective tool to assess the spatial and temporal patterns of Sargassum over large spatial extents, its use so far has been limited to a broad discrimination of Sargassum species from other macroalgae and floating vegetation. Knowledge on the spatial distribution of decayed material will help to support management strategies and inform targeted removal. In this study, we aim to characterise the spectral response of fresh and decayed Sargassum and identify regions of the spectra that offer the greatest separability for the detection and classification of decayed material. We assessed the spectral response of fresh and decayed Sargassum (1) in situ on the beach and (2) in mesocosm experiments where Sargassum samples were allowed to decay over time. We found a decrease in the magnitude of reflectance, noticeably in the visible region (400–700 nm), for decayed, in contrast to fresh, Sargassum. Separability analyses also showed that most spectral bands with a wavelength > ~540 nm will be capable of discriminating between fresh and decayed material, although the near-infrared region offers the greatest degree of separability. We demonstrate, for the first time, that there are clear differences in the spectral reflectance of fresh and decayed Sargassum with potential application for remote sensing approaches.

Maps represent powerful tools to show the spatial variation of a variable in a straightforward manner. A crucial aspect in map rendering for its interpretation by users is the gamut of colours used for displaying data. One part of this problem is linked to the proportion of the human population that is colour blind and, therefore, highly sensitive to colour palette selection. The aim of this paper is to present the cblindplot R package and its founding function - cblind.plot() - which enables colour blind people to just enter an image in a coding workflow, simply set their colour blind deficiency type, and immediately get as output a colour blind friendly plot. We will first describe in detail colour blind problems, and then show a step by step example of the function being proposed. While examples exist to provide colour blind people with proper colour palettes, in such cases (i) the workflow include a separate import of the image and the application of a set of colour ramp palettes and (ii) albeit being well documented, there are many steps to be done before plotting an image with a colour blind friendly ramp palette. The function described in this paper, on the contrary, allows to (i) automatically call the image inside the function without any initial import step and (ii) explicitly refer to the colour blind deficiency type being experienced, to further automatically apply the proper colour ramp palette.

We present a summary of the kinds of outputs submitted to the Geography and Environmental Studies sub‐panel (H‐32) for the 2008 Research Assessment Exercise (RAE), and examine the relationships between the peer assessment of research quality that the RAE process has typified, and alternative modes of assessment based on bibliometrics. This comparison is effected using (in aggregate form) some of the results from the RAE, together with citation data gathered after completion of the RAE assessment, specifically for the purpose of this paper. We conclude that, if it continues to be necessary and desirable to assess, in some measure and however imprecisely, research quality, then peer assessment cannot be replaced by bibliometrics. Bibliometrics permit measurement of something that may be linked to quality but is essentially a different phenomenon – a measure of ‘impact’, for example.

Optical earth observation satellite sensors often provide a coarse spatial resolution (CR) multispectral (MS) image together with a fine spatial resolution (FR) panchromatic (PAN) image. Pansharpening is a technique applied to such satellite sensor images to generate an FR MS image by injecting spatial detail taken from the FR PAN image while simultaneously preserving the spectral information of MS image. Pansharpening methods are mostly applied on a per-pixel basis and use the PAN image to extract spatial detail. However, many land cover objects in FR satellite sensor images are not illustrated as independent pixels, but as many spatially aggregated pixels that contain important semantic information. In this article, an object-based pansharpening approach, termed object-based area-to-point regression kriging (OATPRK), is proposed. OATPRK aims to fuse the MS and PAN images at the object-based scale and, thus, takes advantage of both the unified spectral information within the CR MS images and the spatial detail of the FR PAN image. OATPRK is composed of three stages: image segmentation, object-based regression, and residual downscaling. Three data sets acquired from IKONOS and Worldview-2 and 11 benchmark pansharpening algorithms were used to provide a comprehensive assessment of the proposed OATPRK approach. In both the synthetic and real experiments, OATPRK produced the most superior pan-sharpened results in terms of visual and quantitative assessment. OATPRK is a new conceptual method that advances the pixel-level geostatistical pansharpening approach to the object level and provides more accurate pan-sharpened MS images.

Although the growing number of synthetic aperture radar (SAR) satellites has increased their application in flood-extent mapping, predictive models for the analysis of flood dynamics that are independent of sensor characteristics must be developed to fully extract information from SAR images for flood mitigation. This study aimed to develop hybrid machine-learning models for flood mapping in the Ahvaz region, Iran, based on SAR data. Each hybrid model consists of a support vector machine (SVM) algorithm coupled with one of the following metaheuristic optimization procedures: grey wolf optimization (GWO), differential evolution, and the imperialist competitive algorithm. Sentinel-1 acquired SAR images before and during flooding between 20 March and 26 May of 2019. The goodness-of-fit level and predictive capability of each model were scrutinized using overall accuracy, producer accuracy, and user accuracy. The SVM-GWO approach yielded the highest accuracy with overall accuracies of 96.07% and 93.39% in the training and validation steps, respectively. Furthermore, this hybrid model provided the most accurate classification of water-inundation class based on producer accuracy (96.67%) and user accuracy (95.05%). The results highlight that wetland is the last land-use/land-cover type to return to normal conditions due to the many previously dry oxbow lakes that could trap water for a long time. Furthermore, the nine most suitable sites for flood-protection structures (e.g., embankments and levees) were identified based on floodwater distribution analysis. This work describes a robust, data-parsimonious approach that will benefit flood mitigation studies seeking to identify the most suitable locations for embankments based on spatio-temporal flood dynamics.

Anticipating species distributions in space and time is necessary for effective biodiversity conservation and for prioritising management interventions. This is especially true when considering invasive species. In such a case, anticipating their spread is important to effectively plan management actions. However, considering uncertainty in the output of species distribution models is critical for correctly interpreting results and avoiding inappropriate decision-making. In particular, when dealing with species inventories, the bias resulting from sampling effort may lead to an over- or under-estimation of the local density of occurrences of a species. In this paper we propose an innovative method to i) map sampling effort bias using cartogram models and ii) explicitly consider such uncertainty in the modeling procedure under a Bayesian framework, which allows the integration of multilevel input data with prior information to improve the anticipation species distributions.

Lianas (woody vines) are abundant and diverse, particularly in tropical ecosystems. Lianas use trees for structural support to reach the forest canopy, often putting leaves above their host tree. Thus they are major parts of many forest canopies. Yet, relatively little is known about distributions of lianas in tropical forest canopies, because studying those canopies is challenging. This knowledge gap is urgent to address because lianas compete strongly with trees, reduce forest carbon uptake and are thought to be increasing, at least in the Neotropics. Lianas can be difficult to study using traditional field methods. Their pliable stems often twist and loop through the understorey, making it difficult to assess their structure and biomass, and the sizes and locations of their crowns. Furthermore, liana stems are commonly omitted from standard field surveys. Remote sensing of lianas can help overcome some of these obstacles and can provide critical insights into liana ecology, but to date there has been no systematic assessment of that contribution. We review progress in studying liana ecology using ground‐based, airborne and space‐borne remote sensing in four key areas: (i) spatial and temporal distributions, (ii) structure and biomass, (iii) responses to environmental conditions and (iv) diversity. This demonstrates the great potential of remote sensing for rapid advances in our knowledge and understanding of liana ecology. We then look ahead, to the possibilities offered by new and future advances. We specifically consider the data requirements, the role of technological advances and the types of methods and experimental designs that should be prioritised. Synthesis . The particular characteristics of the liana growth form make lianas difficult to study by ground‐based field methods. However, remote sensing is well suited to collecting data on lianas. Our review shows that remote sensing is an emerging tool for the study of lianas, and will continue to improve with recent developments in sensor and platform technology. It is surprising, therefore, how little liana ecology research has utilised remote sensing to date—this should rapidly change if urgent knowledge gaps are to be addressed. In short, liana ecology needs remote sensing.