Publications

There is an increasing demand for an effective means of post-publication evaluation of ecological work that avoids pitfalls associated with using the impact factor of the journal in which the work was published. One approach that has been gaining momentum is the 'Faculty of 1000' (hereafter F1000) evaluation procedure, in which panel members identify what they believe to be the most 'important' recent publications they have read. Here I focused on 1530 publications from 7 major ecological journals that appeared in 2005, and compared the F1000 rating of each publication with the frequency with which it was subsequently cited. The mean and median citation frequencies of the 103 publications highlighted by F1000 was higher than for all 1530 publications, but not substantially so. Further, the F1000 procedure did not highlight any of the 11 publications that were each cited over 130 (and up to 497) times, while it did highlight 14 publications that were each cited between 4 and 9 times. Further, 46% and 31% of all manuscripts highlighted by F1000 were cited less often than the mean and median respectively of all 1530 publications. Possible reasons for the F1000 process failing to identify high impact publications may include uneven coverage by F1000 of different ecological topics, cronyism, and geographical bias favoring North American publications. As long as the F1000 process cannot identify those publications that subsequently have the greatest impact, it cannot be reliably used as a means of post-publication evaluation of the ecological literature.

Invasive pasture weeds are often believed to have detrimental effects in managed pastures, but little is known as to the nature of these effects. We investigated the impact of the invasive weed species Senecio jacobaea L. (ragwort) on various aspects of a pasture ecosystem in the Waikato area of New Zealand. S. jacobaea plants often enhanced total pasture production in their immediate vicinity, probably through improving microclimatic conditions, and these effects continued for several months after plant death. Lolium perenne L. (perennial ryegrass) was generally stimulated by S. jacobaea, while Trifolium repens L. (white clover) was inhibited by flowering S. jacobaea plants and various weedy species showed a mixed response. Nitrogen fixation by T. repens (measured by acetylene reduction bioassay) was generally unresponsive to S. jacobaea plants but some temporary enhancement was observed around the edges of individual flowering plants. The soil microbial biomass (biomass of microbes responsible for nutrient cycling) and saprophytic microarthropods were both reduced in the area immediately adjacent to flowering S. jacobaea plants, and this appeared to be negatively related to the enhanced production of pasture (especially L. perenne) in this zone. S. jacobaea plants also exerted some effects on soil macrofauna captured in pitfall traps. Addition of nitrogen- and phosphorus- based fertilisers in general did not alter the nature of the interactions we observed. Based on our results for S. jacobaea it would appear that invasive weeds may have a wide range of consequences in pasture ecosystems and these need to be acknowledged before the overall impact of weeds in pastures can be understood.

We estimated the annual production of honeydew per unit land area of beech (Nothofagus spp.) forest by measuring the amount of honeydew produced in 24 h by scale insects (Ultracoelostoma spp.) (Hemiptera: Margarodidae) every month for 2 years. We used exclosures to prevent animals (notably Vespula wasps) removing honeydew, and we compared the standing crop of honeydew inside permanently closed exclosures with that outside exclosures. Honeydew production and the number of honeydew droplets was highly variable between individual trees, tree type, position on tree, and, exclosure type, and within and between years. The amount of honeydew available outside exclosures was significantly reduced in year 2, predominantly by Vespula wasps, even though wasp density was relatively low. Sugar composition also varied between tree type and between years. Up to 5% of the sugar was glucose, with varying proportions of fructose, sucrose and oligosaccharides. The surface area of trees infested with scale insects was estimated using allometric regression relationships between tree diameter and total surface area of tree trunk and branch material. These estimates were combined with measurements of tree diameter in 10-m radius circular plots to give a production estimate of between 3500 and 4500 kg dry weight honeydew ha -1 year -1 . Using this data, combined with previously published estimates of carbon uptake, it was estimated that between 6 and 8% of net primary productivity was released as honeydew. Honeydew scale insects provide large amounts of biologically available carbon in the form of soluble sugar. It is a crucial resource for the above-ground system, and probably also for the below-ground system. We conclude that scale insects have the potential to function as keystone species in these forests.

Summary Conceptual frameworks relating plant traits to ecosystem processes such as organic matter dynamics are progressively moving from a leaf‐centred to a whole‐plant perspective. Through the use of meta‐analysis and global literature data, we quantified the relative roles of litters from above‐ and below‐ground plant organs in ecosystem labile organic matter dynamics. We found that decomposition rates of leaves, fine roots and fine stems were coordinated across species worldwide although less strongly within ecosystems. We also show that fine roots and stems had lower decomposition rates relative to leaves, with large differences between woody and herbaceous species. Further, we estimated that on average below‐ground litter represents approximately 33 and 48% of annual litter inputs in grasslands and forests, respectively. These results suggest a major role for below‐ground litter as a driver of ecosystem organic matter dynamics. We also suggest that, given that fine stem and fine root litters decompose approximately 1.5 and 2.8 times slower, respectively, than leaf litter derived from the same species, cycling of labile organic matter is likely to be much slower than predicted by data from leaf litter decomposition only. Synthesis . Our results provide evidence that within ecosystems, the relative inputs of above‐ versus below‐ground litter strongly control the overall quality of the litter entering the decomposition system. This in turn determines soil labile organic matter dynamics and associated nutrient release in the ecosystem, which potentially feeds back to the mineral nutrition of plants and therefore plant trait values and plant community composition.

The consequences of permanent loss of species or species groups from plant communities are poorly understood, although there is increasing evidence that individual species effects are important in modifying ecosystem properties. We conducted a field experiment in a New Zealand perennial grassland ecosystem, creating artificial vegetation gaps and imposing manipulation treatments on the reestablishing vegetation. Treatments consisted of continual removal of different subsets or "functional groups" of the flora. We monitored vegetation and soil biotic and chemical properties over a 3-yr period. Plant competitive effects were clear: removal of the C3 grass Lolium perenne L. enhanced vegetative cover, biomass, and species richness of both the C4 grass and dicotyledonous weed functional groups and had either positive or negative effects on the legume Trifolium repens L., depending on season. Treatments significantly affected total plant cover and biomass; in particular, C4 grass removal reduced total plant biomass in summer, because no other species had appropriate phenology. Removal of C3 grasses reduced total root biomass and drastically enhanced overall shoot-to-root biomass ratios. Aboveground net primary productivity (NPP) was not strongly affected by any treatment, indicating strong compensatory effects between different functional components of the flora. Removing all plants often negatively affected three further trophic levels of the decomposer functional food web: microflora, microbe-feeding nematodes, and predaceous nematodes. However, as long as plants were present, we did not find strong effects of removal treatments, NPP, or plant biomass on these trophic groupings, which instead were most closely related to spatial variation in soil chemical properties across all trophic levels, soil N in particular. Larger decomposer organisms, i.e., Collembola and earthworms, were unresponsive to any factor other than removal of all plants, which reduced their populations. We also considered five functional components of the soil biota at finer taxonomic levels: three decomposer components (microflora, microbe-feeding nematodes, predaceous nematodes) and two herbivore groups (nematodes and arthropods). Taxa within these five groups responded to removal treatments, indicating that plant community composition has multitrophic effects at higher levels of taxonomic resolution. The principal ordination axes summarizing community-level data for different trophic groups in the soil food web were related to each other in several instances, but the plant ordination axes were only significantly related to those of the soil microfloral community. There were time lag effects, with ordination axes of soil-associated herbivorous arthropods and microbial-feeding nematodes being related to ordination axes representing plant community structure at earlier measurement dates. Taxonomic diversity of some soil organism groups was linked to plant removals or to plant diversity. For herbivorous arthropods, removal of C4 grasses enhanced diversity; there were negative correlations between plant and arthropod diversity, presumably because of negative influences of C4 species in the most diverse treatments. There was evidence of lag relationships between diversity of plants and that of the three decomposer groups, indicating multitrophic effects of altering plant diversity. Relatively small effects of plant removal on the decomposer food web were also apparent in soil processes regulated by this food web. Decomposition rates of substrates added to soils showed no relationship with treatment, and rates of CO2 evolution from the soil were only adversely affected when all plants were removed. Few plant functional-group effects on soil nutrient dynamics were identified. Although some treatments affected temporal variability (and thus stability) of soil biotic properties (particularly CO2 release) throughout the experiment, there was no evidence of destabilizing effects of plant removals. Our data provide evidence that permanent exclusion of plant species from the species pool can have important consequences for overall vegetation composition in addition to the direct effects of vegetation removal, and various potential effects on both the above- and belowground subsystems. The nature of many of these effects is driven by which plant species are lost from the system, which depends on the various attributes or traits of these species.

Despite recent interest in understanding the effects of human-induced global change on carbon (C) storage in terrestrial ecosystems, most studies have overlooked the influence of a major element of global change, namely biological invasions. We quantified ecosystem C storage, both above- and below-ground, on each of 18 islands off the coast of New Zealand. Some islands support high densities of nesting seabirds, while others have been invaded by predatory rats and host few seabirds. Our results show that, by preying upon seabirds, rats have indirectly enhanced C sequestration in live plant biomass by 104%, reduced C sequestration in non-living pools by 26% and increased total ecosystem C storage by 37%. Given the current worldwide distribution of rats and other invasive predatory mammals, and the consequent disappearance of seabird colonies, these predators may be important determinants of ecosystem C sequestration.

Understanding how terrestrial ecosystems function requires a combined aboveground–belowground approach, because of the importance of feedbacks that occur between herbivores, producers, and the decomposer subsystem. In this paper, we identify several mechanisms by which herbivores can indirectly affect decomposer organisms and soil processes through altering the quantity and quality of resources entering the soil. We show that these mechanisms are broadly similar in nature for both foliar and root herbivory, regardless of whether they operate in the short term as a result of physiological responses of individual plants to herbivore attack or long-term following alteration of plant community structure by herbivores and subsequent changes in the quality of litter inputs to soil. We propose that a variety of possible mechanisms is responsible for the idiosyncratic nature of herbivore effects on soil biota and ecosystem function; positive, negative, or neutral effects of herbivory are possible depending upon the balance of these different mechanisms. However, we predict that positive effects of herbivory on soil biota and soil processes are most common in ecosystems of high soil fertility and high consumption rates, whereas negative effects are most common in unproductive ecosystems with low consumption rates. The significance of multiple-species herbivore communities is also emphasized, and we propose that if resource use complementarity among herbivore species or functional groups leads to greater total consumption of phytomass, and thus greater net herbivory, then both positive and negative consequences of increasing herbivore diversity for belowground properties and processes are theoretically possible. Research priorities are highlighted and include a need for comparative studies of herbivore impacts on above- and belowground processes across ecosystems of varying productivity, as well as a need for experimental testing of the influence of antiherbivore defense compounds on complex multitrophic interactions in the rhizosphere and the significance of multiple herbivore species communities on these plant–soil interactions.

There is growing interest in understanding how declining soil fertility in the prolonged absence of major disturbance drives ecological processes, or ‘ecosystem retrogression’. However, there are few well characterized study systems for exploring this phenomenon in the tropics, despite tropics occupying over 40% of the Earth's terrestrial surface. We studied two types of montane rain forest in the Blue Mountains of Jamaica that represent distinct stages in ecosystem development, i.e. an earlier stage with shallow organic matter and a late stage with deep organic matter (hereafter ‘mull’ and ‘mor’ stages). We characterized responses of soil fertility and plant, soil microbial and nematode communities to the transition from mull to mor and whether these responses were coupled. For soil abiotic properties, we found this transition led to lower amounts of both nitrogen (N) and phosphorus (P) and an enhanced N to P ratio. This led to shorter‐statured and less diverse forest, and convergence of tree species composition among plots. At the whole community (but not individual species) level foliar and litter N and P diminished from mull to mor, while foliar N to P and resorption efficiency of P relative to N increased, indicating increasing P relative to N limitation. We also found impairment of soil microbes (but not nematodes) and an increasing role of fungi relative to bacteria during the transition. Our results show that retrogression phenomena involving increasing nutrient (notably P) limitation can be important drivers in tropical systems, and are likely to involve aboveground–belowground feedbacks whereby plants produce litter of diminishing quality, impairing soil microbial processes and thus reducing the supply of nutrients from the soil for plant growth. Such feedbacks between plants and the soil, mediated by plant litter and organic matter quality, may serve as major though often overlooked drivers of long term environmental change.

Summary There has been much recent interest in understanding how functional traits of vascular plant species drive ecological processes such as herbivory and litter decomposition. In plants, these two processes are often driven by the same or similar suites of traits and therefore correlate across species. However, few studies have considered how traits of plant‐like life forms such as lichens determine species differences in their effects on ecological processes. This is despite the significant contribution of lichens to carbon and nutrient cycling in many environments. We collected 28 lichen species that differed in their growth form, substrate type and capacity to fix N, and determined key traits for each species. For each species, we performed a feeding bioassay using the generalist snail C epaea hortensis and carried out a laboratory bioassay to assess decomposability. We did these tests both with intact lichen material containing natural concentrations of carbon‐based secondary compounds ( CBSC s), and material that had been acetone rinsed to reduce concentrations of CBSC s, to evaluate the effect of CBSC on palatability and decomposability. We found that reducing CBSC concentrations greatly increased palatability for 17 species, and decomposability of 10 species. However, decomposability was correlated with several lichen traits while palatability was not, regardless of whether or not CBSC s were removed, and we therefore found no relationship between decomposability and palatability across species. Decomposability and palatability both varied, but in contrasting directions, among N‐fixing vs. non‐fixing lichens, lichens with different growth forms and those from contrasting substrate types. As such, N‐fixing lichens had higher decomposition rates but lower consumption rates than non‐fixing lichens, while foliose species had higher decomposition rates but lower consumption rates than fruticose species. Synthesis : We have shown that lichen CBSC s regulate key processes such as lichenivory and decomposition, that lichen decomposability but not palatability are related to traits, and that these two processes are unrelated across species. These results highlight the potential role of lichen species differences in influencing ecosystem processes relating to decomposition and nutrient cycling and the role that grazers may play in driving this.