Publications

Seroprevalence surveys suggest that more than a third and possibly more than half of the global population has been infected with SARS-CoV-2 by early 2022. As large numbers of people continue to be infected, the efficacy and duration of natural immunity in terms of protection against SARS-CoV-2 reinfections and severe disease is of crucial significance for the future. This narrative review provides an overview on epidemiological studies addressing this issue. National surveys covering 2020-2021 documented that a previous SARS-CoV-2 infection is associated with a significantly reduced risk of reinfections with efficacy lasting for at least one year and only relatively moderate waning immunity. Importantly, natural immunity showed roughly similar effect sizes regarding protection against reinfection across different SARS-CoV-2 variants, with the exception of the Omicron variant for which data are just emerging before final conclusions can be drawn. Risk of hospitalizations and deaths was also reduced in SARS-CoV-2 reinfections versus primary infections. Observational studies indicate that natural immunity may offer equal or greater protection against SARS-CoV-2 infections compared to individuals receiving two doses of an mRNA vaccine, but data are not fully consistent. The combination of a previous SARS-CoV-2 infection and a respective vaccination, termed hybrid immunity, seems to confer the greatest protection against SARS-CoV-2 infections, but several knowledge gaps remain regarding this issue. Natural immunity should be considered for public health policy regarding SARS-CoV-2.

No abstract is provided for this article.

BGP is essential to the operation of the Internet, but is vulnerable to both accidental failures and malicious attacks. We propose a new protocol that works in concert with BGP, which Autonomous Systems will use to help detect and mitigate accidentally or maliciously introduced faulty routing information. The protocol differs from previous efforts at securing BGP in that it is receiver-driven, meaning that there is a mechanism for recipients of BGP UPDATE messages to corroborate the information they receive and to provide feedback. We argue that our new protocol can be adopted incrementally, and we show that there is incentive for network operators to do so. We also describe our prototype implementation.

Histological brain slices are widely used in neuroscience to study the anatomical organization of neural circuits. Systematic and accurate comparisons of anatomical data from multiple brains, especially from different studies, can benefit tremendously from registering histological slices onto a common reference atlas. Most existing methods rely on an initial reconstruction of the volume before registering it to a reference atlas. Because these slices are prone to distortions during the sectioning process and often sectioned with non-standard angles, reconstruction is challenging and often inaccurate. Here we describe a framework that maps each slice to its corresponding plane in the Allen Mouse Brain Atlas (2015) to build a plane-wise mapping and then perform 2D nonrigid registration to build a pixel-wise mapping. We use the L2 norm of the histogram of oriented gradients of two patches as the similarity metric for both steps, and a Markov random field formulation that incorporates tissue coherency to compute the nonrigid registration. To fix significantly distorted regions that are misshaped or much smaller than the control grids, we train a context-aggregation network to segment and warp them to their corresponding regions with thin plate spline. We have shown that our method generates results comparable to an expert neuroscientist and is significantly better than reconstruction-first approaches. \textcolor{red}{Code and sample dataset are available at \url{sites.google.com/view/brain-mapping}.}

A power-efficient 6.25Gb/s transceiver in 90nm CMOS for chip-to-chip communication is presented, it dissipates 2.2mW/Gb/s operating at a BER of <10 <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">-15</sup> over a channel with -15dB attenuation at 3.125GHz. A shared LC-PLL, resonant clock distribution, a low-swing voltage-mode transmitter, a low-power phase rotator, and a software-based CDR and an adaptive equalizer are used to reduce power

This paper focuses on the trade-off between flexibility and efficiency in specialized computing. We observe that specialized units achieve most of their efficiency gains by tuning data storage and compute structures and their connectivity to the data-flow and data-locality patterns in the kernels. Hence, by identifying key data-flow patterns used in a domain, we can create efficient engines that can be programmed and reused across a wide range of applications. We present an example, the Convolution Engine (CE), specialized for the convolution-like data-flow that is common in computational photography, image processing, and video processing applications. CE achieves energy efficiency by capturing data reuse patterns, eliminating data transfer overheads, and enabling a large number of operations per memory access. We quantify the tradeoffs in efficiency and flexibility and demonstrate that CE is within a factor of 2-3x of the energy and area efficiency of custom units optimized for a single kernel. CE improves energy and area efficiency by 8-15x over a SIMD engine for most applications.

Researchers have great flexibility in the analysis of observational data. If combined with selective reporting and pressure to publish, this flexibility can have devastating consequences on the validity of research findings. We extend the recently proposed vibration of effects approach to provide a framework comparing three main sources of uncertainty which lead to instability in observational associations, namely data pre-processing, model and sampling uncertainty. We analyze their behavior for varying sample sizes for two associations in personality psychology. While all types of vibration show a decrease for increasing sample sizes, data pre-processing and model vibration remain non-negligible, even for a sample of over 80000 participants. The increasing availability of large data sets that are not initially recorded for research purposes can make data pre-processing and model choices very influential. We therefore recommend the framework as a tool for the transparent reporting of the stability of research findings.

Researchers increasingly use meta-analysis to synthesize the results of several studies in order to estimate a common effect. When the outcome variable is continuous, standard meta-analytic approaches assume that the primary studies report the sample mean and standard deviation of the outcome. However, when the outcome is skewed, authors sometimes summarize the data by reporting the sample median and one or both of (i) the minimum and maximum values and (ii) the first and third quartiles, but do not report the mean or standard deviation. To include these studies in meta-analysis, several methods have been developed to estimate the sample mean and standard deviation from the reported summary data. A major limitation of these widely used methods is that they assume that the outcome distribution is normal, which is unlikely to be tenable for studies reporting medians. We propose two novel approaches to estimate the sample mean and standard deviation when data are suspected to be non-normal. Our simulation results and empirical assessments show that the proposed methods often perform better than the existing methods when applied to non-normal data.

Abstract Background In the behavioral sciences, conducting pilot and/or feasibility studies (PFS) is a key step that provides essential information used to inform the design, conduct, and implementation of a larger-scale trial. There are more than 160 published guidelines, reporting checklists, frameworks, and recommendations related to PFS. All of these publications offer some form of guidance on PFS, but many focus on one or a few topics. This makes it difficult for researchers wanting to gain a broader understanding of all the relevant and important aspects of PFS and requires them to seek out multiple sources of information, which increases the risk of missing key considerations to incorporate into their PFS. The purpose of this study was to develop a consolidated set of considerations for the design, conduct, implementation, and reporting of PFS for interventions conducted in the behavioral sciences. Methods To develop this consolidation, we undertook a review of the published guidance on PFS in combination with expert consensus (via a Delphi study) from the authors who wrote such guidance to inform the identified considerations. A total of 161 PFS-related guidelines, checklists, frameworks, and recommendations were identified via a review of recently published behavioral intervention PFS and backward/forward citation tracking of a well-known PFS literature (e.g., CONSORT Ext. for PFS). Authors of all 161 PFS publications were invited to complete a three-round Delphi survey, which was used to guide the creation of a consolidated list of considerations to guide the design, conduct, and reporting of PFS conducted by researchers in the behavioral sciences. Results A total of 496 authors were invited to take part in the three-round Delphi survey (round 1, N = 46; round 2, N = 24; round 3, N = 22). A set of twenty considerations, broadly categorized into six themes (intervention design, study design, conduct of trial, implementation of intervention, statistical analysis, and reporting) were generated from a review of the 161 PFS-related publications as well as a synthesis of feedback from the three-round Delphi process. These 20 considerations are presented alongside a supporting narrative for each consideration as well as a crosswalk of all 161 publications aligned with each consideration for further reading. Conclusion We leveraged expert opinion from researchers who have published PFS-related guidelines, checklists, frameworks, and recommendations on a wide range of topics and distilled this knowledge into a valuable and universal resource for researchers conducting PFS. Researchers may use these considerations alongside the previously published literature to guide decisions about all aspects of PFS, with the hope of creating and disseminating interventions with broad public health impact.