The activity of extracellular phosphatases is a dynamic process controlled by both plant roots and microorganisms, which is responsible for the mineralization of soil phosphorus (P). Plants regulate the availability of soil P through the release of root mucilage and the exudation of low-molecular weight organic acids (LMWOAs). Mucilage increases soil hydraulic conductivity as well as pore connectivity, both of which are associated with increased phosphatase activity. The LMWOAs, in turn, stimulate the mineralization of soil P through their synergistic effects of acidification, chelation, and exchange reactions. This article reviews the catalytic properties of extracellular phosphatases and their interactions with the rhizosphere interfaces. We observed a biphasic effect of root metabolic products on extracellular phosphatases, which notably altered their catalytic mechanism. In accordance with the proposed conceptual framework, soil P is acquired by both plants and microorganisms in a coupled manner that is characterized by the exudation of their metabolic products. Due to inactive or reduced root exudation, plants recycle P through adsorption on the soil matrix, thereby reducing the rhizosphere phosphatase activity. The two-phase conceptual framework might assist in understanding P-acquisition (substrate turnover) and P-restoration (phosphatase adsorption by soil) in various terrestrial ecosystems.
Mechanisms of carbon dioxide (CO2) release from soil in the absence of oxygen were studied considering the Fenton process, which encompasses the reaction of H2O2 with Fe(II) yielding a hydroxyl radical (OH), in combination with manganese peroxidase (MnP) and lignin peroxidase (LiP). This study aimed to explain the high rate of soil organic matter (SOM) mineralisation and CO2 release from humid temperate rainforest soils under oxygen-limited conditions. The investigated mechanisms challenge the traditional view that SOM mineralisation in rainforest is slow due to anaerobic (micro)environments under high precipitation and explain intensive CO2 release even under oxygen limitation. We hypothesised that the Fenton reaction (FR) greatly contributes to the CO2 released from SOM mineralised under anaerobic conditions especially in the presence of ligninolytic enzymes. We used a novel technique that combines labelled H2 18O2 and Fe(II) to induce the FR and measured CO18O, Fe(II) solubilisation, and peroxide consumption in a closed gas circulation system for 6 h. Maximal CO2 amount was released when the FR was induced in combination with LiP addition. The CO2 efflux with LiP was 10-fold that of abiotic FR reactions without enzymes, or in soils amended with MnP. This was consistent with i) the contribution of 18O from peroxide to CO2 release, ii) peroxide consumption, and iii) Fe(II) solubilisation by FR. The amount of consumed peroxide was closely correlated with the CO18O derived from soil without enzyme addition or with LiP addition. Concluding, abiotic Fenton Reaction coupled with oxidative enzymes, such as LiP, are crucial for SOM oxidation under anaerobic conditions, e.g. in temperate rainforest soils.
We developed a software tool enabling user-friendly and standardized pre- and post-processing of images of rooted soil by combining image processing techniques such as image registration, calibration, and segmentation in a graphical user interface. The added benefits of this image processing approach include an improved workflow in soil zymography. For evaluation, we conducted a rhizobox experiment with maize and determined the activity of leucine-aminopeptidase before and after glucose addition based on soil zymography. The temporal and spatial distribution of enzyme activity at the root-soil interface can be visualized by Root-o-Mat which offers 1) standardized image pre-processing, 2) calibration, 3) identification of hotspots of various intensity thresholds, 4) spatial analysis for selected roots, 5) inter-active illustration of enzyme activity profile lines, 6) image viewer, and 7) detection of temporal changes of enzyme activity. Registering images of the same rhizobox taken in successive periods allows further temporal and spatial analysis. We conclude that Root-o-Mat simplifies and firmly anchors image processing and image analyses in soil zymography. The new software can be downloaded for free (www.root-o-mat.de).
Soil imaging visualizes and quantifies processes in soil hotspots across space and time involving microorganisms, roots and carbon and nutrient sources, thereby helping to elucidate mechanisms. A wide range of individual approaches exists to determine spatial distributions of soil pH (optodes), root exudation and pesticides (14C phosphor imaging), fertilizers (33P phosphor imaging), nutrient fluxes (DGT), etc.Since processes and mechanisms are clearly multi-factorial, combining individual approaches is key for any real understanding of soil processes. Multi-imaging comes with a set of challenges as firstly, scales need to be bridged as imaging methods operate at different spatial scales from cm to nm. Secondly, their time scales vary from minutes to days. Thirdly, the sequence of method application needs careful consideration as some methods leave behind chemicals, which may interfere with other measurements.Imaging methods were initially developed for laboratory-controlled conditions, and only several were already adapted for field conditions. We will present the challenges for application soil imaging techniques in the field and problems related to sequential application. We will suggest a workflow for multi-imaging, which includes suggestions on coupling methods to study defined soil process, the sequence of the methods application, image alignment, hotspot thresholding and analysis, co-localization of images and quantitative image analysis. The perspectives, advantages and challenges of multi-imaging approaches will be comprehensively discussed.
Alternate wetting-drying (AWD) in rice cultivation controls soil redox conditions and consequently nutrient solubility. Under low redox potential, ferric iron reduction leads to bound phosphate (Fe(III)–P) dissolution, but lack of oxygen retards organic phosphorus (Porg) mineralization. Microorganisms accelerate Porg mineralization as the redox potential increases during drying, but it is not known which P source will be preferentially taken up by microorganisms and plants. Using double 32/33P labeling, we traced for the first time the P released from inorganic (32P) and organic (33P) sources into microbial biomass P (MBP), phospholipids, and plants under continuous flooding (CF) and AWD. The CF rapidly induced reducing conditions that increased Fe–P dissolution and thus P availability. The AWD had no preference for 32P and 33P incorporation into plants. However, the ratios of 32P in roots to 32P in MBP or to 32P in phospholipids in rooted soil were 4–9 times higher than the respective ratios of 33P. Moreover, the ratios of 33P in roots to 33P in MBP or to 33P in phospholipids were always <0.6. Thus, plants and microorganisms were more competitive for P from Fe–P and from Porg, respectively. The AWD increased 32P and 33P incorporation into phospholipids in rooted soil by 53–56% as compared to CF. Also, the ratio of 32P in phospholipids to 32P in MBP was 1.4–2.2 times higher under AWD than under CF. Thus, AWD stimulated microorganisms to allocate more P for cell membrane synthesis as compared to CF. Plants were similarly effective to take up P from inorganic and organic sources. Increased root biomass stimulated arbuscular mycorrhizal symbiosis (represented by 16:1ω5c) and thus 33P recovery in roots under AWD. In turn, the acceleration of microbial P turnover and the microbe-specific preference for Porg highlight the importance of arbuscular mycorrhiza for plant P uptake under fluctuating water conditions.
Soil microbes are major regulators of soil ecosystem services and play a crucial role for carbon and nutrient cycling. Soil microbial activity can be altered by the application of biochar and of rock powder for enhanced weathering &#8211; two promising carbon dioxide removal (CDR) techniques. While most recent research considered both CDR methods separately, their co-application could offer additional benefits for CDR, soil health, and crop yield. Here, we compare the influence of pure wood biochar and pure basanite powder with the product of pre-pyrolytic combination of woody biomass and basanite powder (referred to as PyMiCCS). To determine the influence of joint pyrolysis, we also include a post-pyrolysis-combination (PPC) equivalent to PyMiCCS. The aim of this study was to determine the influence of co-applied biochar and basanite powder on enzyme kinetics. Therefore, we grew cabbage turnip (Brassica oleracea) in lysimeters filled with a sandy agricultural topsoil (control) and an amendment (biochar, basanite powder, PyMiCCS, PPC) over a period of nine weeks. Afterwards, the soil samples were analyzed for enzyme kinetics of &#223;-glucosidase, chitinase, leucine-aminopeptidase, and acid phosphatase.Preliminary results show significantly enhanced Vmax (maximum rate of soil enzyme activity) of acid phosphatase in all treatments compared to the other studied enzymes, implying a relatively high demand for P. Furthermore, we found that treatments containing biochar, PyMiCCS, and PCC had up to 50% lower Vmax values for &#223;-glucosidase, chitinase, and acid phosphatase relative to control and basanite treatments. In contrast to this, leucine-aminopeptidase showed an increase in Vmax of up to 40% in biochar, PyMiCCS, and PCC treatments compared to control and basanite treatments. This could be interpreted as a shift of nutrient demand towards N due to the addition of biochar, PyMiCCS, and PCC, resulting in an increased production of the N-cycle-related leucine-aminopeptidase. This increased N demand could be caused by the fixation of N-rich molecules by the amendments, or by the release of other nutrients, such as P or C. Consistently with the latter, we observed a significant increase in C content of up to 50% following the application of biochar, PyMiCCS, and PPC, whereas the N content showed little to no increase. Our results so far indicate that the co-application of biochar and basanite powder affects soil microbial activity by shifting nutrient availability. However, the interactive effect of the co-applied amendments on mineral N and microbial biomass is still subject to further analyses.