Publications

Low dielectric constant, porous silica was made from commercially available methyl silsesquioxane (MSQ) by the addition of a sacrificial polymer, substituted norbornene polymer containing triethoxysilyl groups (NB), to the MSQ. The silsesquioxane‐NB polymer film mixture was thermally cured followed by decomposition of the NB at temperatures above . The dielectric constant of the MSQ was lowered from 2.7 to 2.3 by creating pores in the MSQ. The voids created in the MSQ exhibited a closed‐pore structure. The concentration of NB in the MSQ affected the number of pores but not their size. Porous films were also created in a methyl siloxane spin‐on‐glass and its dielectric constant was lowered from 3.1 to 2.7. Infrared spectroscopy was used to follow the curing of the MSQ and decomposition of the NB. ©1999 The Electrochemical Society

Abstract Background: Trophoblast cell surface antigen 2 (TROP-2) is a member of Tumor-associated Calcium Signal Transducer family (TACSTD2), which is a 35kDa transmembrane protein with 4 N-linked glycosylation sites. The overexpression of TROP2 in various cancers is associated with poor prognosis and increased risk of metastasis. Anti-TROP2 antibody drug conjugates (ADCs) are emerging as an innovative therapeutic intervention for cancer treatment. While these efforts were rewarded by the FDA approval of Trodelvy (Sacituzumab govitecan), a Trop2 targeted ADC, in 2020 for the TNBC patients, tumor heterogeneity could present one of the limitations for the Trop2-targeting therapy, leading to drug resistance. Here, we report our effort in developing a novel biparatopic TROP2 ADC which demonstrate superior cell killing activity compared with the monospecific TROP2 ADC, including certain resistant cell lines for the approved therapy. Methods: Various biparatopic Abs were engineered using two different mAbs targeting the two non-overlapping epitopes of Trop2. The physical stability and biological activities were characterized. Binding competition assay was utilized for epitope binning using SPR. Cell binding affinity was determined using flow cytometry. Cellular internalization activity was measured using Incucyte system, and tumor cell killing efficacy was evaluated in multiple cancer cell lines. CDX mouse models were utilized to investigate the TROP2-ADC in vivo efficacy. Results: We identified a biparatopic TROP2 mAb using two monospecific TROP2 mAbs with A recognizing the same epitope as Trodelvy, and B binding to a non-overlapping epitope vs Sacituzumab’s. mAb-B demonstrates superior ability to recognize a few resistance cell lines to mAb-A. The biparatopic TROP2 mAb-A/B displays a KD of 0.81 nM protein binding compared with 6.42 nM and 0.26 nM, respectively for mAb-A and mAb-B. Importantly, the biparatopic mAb-A/B demonstrates significantly faster cellular internalization activity compared to those of the individual mAbs, signifying the biparatopic scaffold could drive receptor clustering and subsequently enhance the internalization, trafficking to the lysosome and degradation of the target. As expected, the ADC of the biparatopic mAb-A/B conjugated with a TOPi payload shows cancer cell killing efficacy in both in vitro and in vivo experiments. Furthermore, we tested mAb-A, -B and biparatopic mAb-A/B for their binding affinity to 14 missense mutations in TROP2 ECD expressed in HEK293 cells. Interestingly, mAb-A showed decreased binding in 5 mutant cell lines, while mAb-B and biparatopic mAb-A/B maintains activity. Conclusion: We have engineered a novel TROP2 biparatopic antibody with unique biological features as well as superior in vitro and in vivo activities. Such a biparatopic ADC presents its potential to be a best-in-class ADC therapy by overcoming the limitation of the monospecific ADC therapy such as drug resistance. Citation Format: Yinan Wu, Brittany Jiang, Julliet Rivera, Fang Wang, Jing Zhou, Lin Liu, Silvia Hudson, Will Draper, Jennifer Li, Xiaoshan Min, Hang Chen, Zhulun Wang. Towards development of a novel biparatopic trop2-ADC [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 3136.

To select the most efficient chemical to induce apoptosis in leukemia cells, a multidrug screen was applied on bone marrow mononuclear cells from chronic myeloid leukemia (CML) patients. Oprozomib (Cpd 21) was chosen for the subsequent experiments. The isobaric tags for relative and absolute quantitation (iTRAQ) was then performed to identify the responsible pathway relative to apoptosis and the results showed that endoplasmic reticulum (ER) chaperones were upregulated. Apoptosis was attributed to a joint effect of calcium leakage andPERK and IRE1α phosphorylation. The PERK branch was responsible for the first wave of cell death that occurred within 24 hours. The later wave of apoptosis was mediated by IRE1α, which transmit apoptotic signals through the ASK-JNK-BIM axis. Release of Ca2+ from ER into cytosol resulted in activation of calpain, which, in turn, cleaved caspase-12. Our data also explained the selective killing effects of oprozomib on CML cells, which relied on proteasome activity. The present study demonstrated that prolonged inhibition of proteasome to trigger unfolded protein response could be an alternative strategy for treating CML in light of tyrosine kinase inhibitors resistance.

'Plasmonic Waveguides' published in 'Encyclopedia of Nanotechnology'

Stripe domain (SD) in obliquely sputtered permalloy films were investigated by comparing with normally sputtered ones. The critical thickness for SD formation of obliquely sputtered films was about 100 nm thinner than that of normally sputtered films. The hysteresis loops of obliquely sputtered films showed a peculiar shape. A rotation of SD towards easy axis was observed in the obliquely sputtered films, which was confirmed by permeability spectra under a bias field. The origin of the rotation could result from in-plane uniaxial anisotropy, which is induced by the shape effect of the oblique columnar growth of permalloy grains.

'Polymer Nanocapsules' published in 'Encyclopedia of Nanotechnology'

We predict, from computer modeling and simulation in partnership with experiment, a general strategy for synthesizing spherical oxide nanocrystals via crystallization from melt. In particular we "simulate synthesis" to generate full atomistic models of undoped and Ti-doped CeO2 nanoparticles, nanorods, and nanoporous framework architectures. Our simulations demonstrate, in quantitative agreement with experiment [Science 2006, 312, 1504], that Ti (dopant) ions change the shape of CeO2 nanocrystals from polyhedral to spherical. We rationalize this morphological change by elucidating, at the atomistic level, the mechanism underpinning its synthesis. In particular, CeO2 nanocrystals can be synthesized via crystallization from melt: as a molten (undoped) CeO2 nanoparticle is cooled, nucleating seeds spontaneously evolve at the surface and express energetically stable [111] facets to minimize the energy. As crystallization proceeds, the [111] facets grow, thus facilitating a polyhedral shape. Conversely, when doped with Ti, a (predominantly) TiO2 shell encapsulates the inner CeO2 core. This shell inhibits the evolution of nucleating seeds at the surface thus rendering it amorphous during cooling. Accordingly, crystallization is forced to proceed via the evolution of a nucleating seed in the bulk CeO2 region of the nanoparticle, and as this seed grows, it remains surrounded by amorphous ions, which "wrap" around the core so that the energies for high-index facets are drastically reduced; these amorphous ions adopt a spherical shape to minimize the surface energy. Crystallization emanates radially from the nucleating seed, and because it is encapsulated by an amorphous shell, the crystallization front is not compelled to express energetically favorable surfaces. Accordingly, after the nanoparticle has crystallized it retains this spherical shape. A typical animation showing the crystallization (with atomistic detail) is available as Supporting Information. From this data we predict that spherical oxide nanocrystals can be synthesized via crystallization from melt in general by suppressing nucleating seed evolution at the surface thus forcing the nucleating seed to spontaneously evolve in the bulk. Nanospheres can, similar to zeolitic classifications, constitute Secondary Building Units (SBUs) and can aggregate to form nanorods and nanoporous framework architectures. Here we have attempted to simulate this process to generate models for CeO2 and Ti-doped CeO2 nanorods and framework architectures. In particular, we predict that Ti doping will "smooth" the surfaces: hexagonal prism shaped CeO2 nanorods with [111] and [100] surfaces become cylindrical, and framework architectures change from facetted pores and channels with well-defined [111] and [100] surfaces to "smooth" pores and channels (expressing both concave and convex curvatures). Such structures are difficult to characterize using, for example, Miller indices; rather we suggest that these new structural materials may be better described using minimal surfaces.

Abstract In the development of smart cities, accurate liquid flow monitoring is essential for the efficient operation of water supply systems. Current flow sensors often face limitations in sensitivity and environmental adaptability, affecting measurement accuracy, and restricting their application in smart city infrastructure. To address these challenges, this study proposes a high‐accuracy flow monitoring method. Specifically, by combining the bionic design with advanced signal processing techniques, the sensitivity and anti‐interference ability are improved, respectively, to enhance the measurement accuracy. Based on this method, a self‐powered flow sensor (SPFS) is developed using noncontact triboelectric nanogenerators (NC‐TENGs) as the sensing unit. The SPFS achieves a sensitivity of 2.07 Hz L −1 min −1 and improves the signal‐to‐noise ratio by more than 13 times over the initial sensing signal. In addition, an intelligent system is developed to accurately measure water resources. The maximum flow rate error rate is less than 0.97% compared to commercial flow sensors. The SPFS demonstrates higher sensitivity and accuracy compared to the existing TENG flow sensors. This study addresses the limitations of existing flow sensors and pioneers a novel solution for enhanced water resource management in smart cities.

A challenge with studying cancer transcriptomes is in distilling the wealth of information down into manageable portions of information. In this resource, we develop an approach that creates and assembles cancer type-specific gene expression modules into flexible barcodes, allowing for adaptation to a wide variety of uses. Specifically, we propose that modules derived organically from high-quality gold standards such as The Cancer Genome Atlas (TCGA) can accurately capture and describe functionally related genes that are relevant to specific cancer types. We show that such modules can: (1) uncover novel gene relationships and nominate new functional memberships, (2) improve and speed up analysis of smaller or lower-resolution datasets, (3) re-create and expand known cancer subtyping schemes, (4) act as a “decoder” to bridge seemingly disparate established gene signatures, and (5) efficiently apply single-cell RNA sequencing information to other datasets. Moreover, such modules can be used in conjunction with native spreadsheet program commands to create a powerful and rapid approach to hypothesis generation and testing that is readily accessible to non-bioinformaticians. Finally, we provide tools for users to create and interpret their own modules. Overall, the flexible modular nature of the proposed barcoding provides a user-friendly approach to rapidly decoding transcriptome-wide data for research or, potentially, clinical uses.